RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PEX12O00623 359 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 STX16O14662 325 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 HEXBP07686 556 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 CELA2AP08217 269 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 COX6A1P12074 109 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 TSPAN8P19075 237 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 DEKP35659 375 aaKnown RBP10.52□□□□□ -0.73
VRK3-210ENST00000596121 PIK3CGP48736 1102 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 BTN3A2P78410 334 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 RHAGQ02094 409 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 EEF1A2Q05639 463 aaKnown RBP10.52□□□□□ -0.73
VRK3-210ENST00000596121 PCOLCEQ15113 449 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 UNC50Q53HI1 259 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 GRHL2Q6ISB3 625 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 TCTN3Q6NUS6 607 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 ABHD17CQ6PCB6 329 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 TMEM205Q6UW68 189 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 LANCL3Q6ZV70 420 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 ABHD13Q7L211 337 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 PARP9Q8IXQ6 854 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 CA13Q8N1Q1 262 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 L3MBTL4Q8NA19 623 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 ACMSDQ8TDX5 336 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 CCT6BQ92526 530 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 CAVIN3Q969G5 261 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 GAL3ST3Q96A11 431 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 NACC2Q96BF6 587 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 IP6K3Q96PC2 410 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 CCDC77Q9BR77 488 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 MS4A8Q9BY19 250 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 ZBTB20Q9HC78 741 aaPredicted RBP10.52□□□□□ -0.73
VRK3-210ENST00000596121 PRDM7Q9NQW5 492 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 C14orf105Q9NVL8 296 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 ZNF225Q9UK10 706 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 TNPO3Q9Y5L0 923 aaKnown RBP10.52□□□□□ -0.73
VRK3-210ENST00000596121 SPENQ96T58 3664 aaKnown RBP10.52□□□□□ -0.73
VRK3-210ENST00000596121 DOCK10Q96BY6 2186 aa10.52□□□□□ -0.73
VRK3-210ENST00000596121 SCN2AQ99250 2005 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 LOC102723996A0A087X1L8 192 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 A0A1W2PQ72 361 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 ANKDD1BA6NHY2 528 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 EIF4E1BA6NMX2 242 aaKnown RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 B8ZZF3 427 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 G3V2L1 256 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 MKRN2OSH3BPM6 223 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 RTCAO00442 366 aaKnown RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 ERI3O43414 337 aaKnown RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 B4GALT2O60909 372 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 SMIM24O75264 130 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 CDC123O75794 336 aaPredicted RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 ETHE1O95571 254 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 TGFB1P01137 390 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 IGHEP01854 428 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 RPS17P08708 135 aaKnown RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 NUDT17P0C025 328 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 SFTPCP11686 197 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 PCNAP12004 261 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 NEK2P51955 445 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 HNRNPFP52597 415 aaKnown RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 PLA2G16P53816 162 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 RRADP55042 308 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 CDH13P55290 713 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 SOX8P57073 446 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 BTG2P78543 158 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 TRAF3Q13114 568 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 LAPTM5Q13571 262 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 RASA2Q15283 850 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 HIST2H2ACQ16777 129 aaPredicted RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 MINDY4Q4G0A6 757 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 LACTB2Q53H82 288 aaPredicted RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 PAGE2BQ5JRK9 111 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 HIST2H2AA3Q6FI13 130 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 MED27Q6P2C8 311 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 EMBQ6PCB8 327 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 ZNF793Q6ZN11 406 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 ASB18Q6ZVZ8 466 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 NDUFAF7Q7L592 441 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 ANKRD37Q7Z713 158 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 GALNT16Q8N428 558 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 TMEM52Q8NDY8 209 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 PLPP5Q8NEB5 264 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 TTLQ8NG68 377 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 OR2L5Q8NG80 312 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 HUS1BQ8NHY5 278 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 ZNF483Q8TF39 744 aaPredicted RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 TSLPQ969D9 159 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 SEC16BQ96JE7 1060 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 FER1L6-AS2Q96M78 137 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 WDR77Q9BQA1 342 aaPredicted RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 SLC25A23Q9BV35 468 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 SORBS1Q9BX66 1292 aaKnown RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 C1QTNF3Q9BXJ4 246 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 ZNF552Q9H707 407 aaPredicted RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 ACTR8Q9H981 624 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 ZNF160Q9HCG1 818 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 SEMA4BQ9NPR2 832 aaPredicted RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 RAB21Q9UL25 225 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 ANGPTL3Q9Y5C1 460 aa10.51□□□□□ -0.73
VRK3-210ENST00000596121 PCDHGA9Q9Y5G4 932 aaKnown RBP10.51□□□□□ -0.73
VRK3-210ENST00000596121 CLDN16Q9Y5I7 305 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms