RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 TRIM64A6NGJ6 449 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 TRIM64BA6NI03 449 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 TMEM110-MUSTN1A8MSY1 372 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 CCDC188H7C350 402 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 PENKP01210 267 aaPredicted RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 TRIM49P0CI25 452 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 TRIM49CP0CI26 452 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 CD59P13987 128 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 SP100P23497 879 aaPredicted RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 ACAT1P24752 427 aaKnown RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 ELAVL4P26378 380 aaKnown RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 MTCP1P56278 107 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 MAP2K1Q02750 393 aaPredicted RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 IFT88Q13099 833 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 SRSF9Q13242 221 aaKnown RBP eCLIP4.4□□□□□ -1.71
NUP88-213ENST00000576862 TAF1BQ53T94 588 aaPredicted RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 HECTD3Q5T447 861 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 CCDC186Q7Z3E2 898 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 METTL21AQ8WXB1 218 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 N4BP2L2Q92802 583 aaPredicted RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 ANKRD9Q96BM1 317 aaPredicted RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 OMA1Q96E52 524 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 RMDN2Q96LZ7 410 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 TDRD1Q9BXT4 1180 aaKnown RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 SDCBP2Q9H190 292 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 MED20Q9H944 212 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 RAVER2Q9HCJ3 691 aaKnown RBP4.4□□□□□ -1.71
NUP88-213ENST00000576862 RABL2BQ9UNT1 228 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 CD163L1Q9NR16 1453 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 SLIT1O75093 1534 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 NINLQ9Y2I6 1382 aa4.4□□□□□ -1.71
NUP88-213ENST00000576862 BLMP54132 1417 aaPredicted RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 POLR1AO95602 1720 aaPredicted RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 IGKV3D-20A0A0C4DH25 116 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 ERI2A8K979 691 aaKnown RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 C17orf105B2RV13 164 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 PI4K2BG5E9Z4 385 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 PI15O43692 258 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 F3P13726 295 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 TSFMP43897 325 aaKnown RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 CD151P48509 253 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 LMO4P61968 165 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 HMGN5P82970 282 aaKnown RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 LY6DQ14210 128 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 FASTKD3Q14CZ7 662 aaKnown RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 MOGAT2Q3SYC2 334 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 LBHQ53QV2 105 aaPredicted RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 CES4AQ5XG92 561 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 OR4C11Q6IEV9 310 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 ENPP7Q6UWV6 458 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 KIF6Q6ZMV9 814 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 ERN2Q76MJ5 926 aaKnown RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 FCRLAQ7L513 359 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 CPEB2Q7Z5Q1 589 aaKnown RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 GPC2Q8N158 579 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 CCAR2Q8N163 923 aaKnown RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 NUP37Q8NFH4 326 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 SEPT1Q8WYJ6 367 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 PRICKLE1Q96MT3 831 aaPredicted RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 OVOL2Q9BRP0 275 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 HOXD1Q9GZZ0 328 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 NUDT4Q9NZJ9 180 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 ELF5Q9UKW6 265 aaPredicted RBP4.39□□□□□ -1.71
NUP88-213ENST00000576862 INSRP06213 1382 aa4.39□□□□□ -1.71
NUP88-213ENST00000576862 MYOM1P52179 1685 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 PES1O00541 588 aaKnown RBP4.38□□□□□ -1.71
NUP88-213ENST00000576862 IDH3BO43837 385 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 DKC1O60832 514 aaKnown RBP eCLIP4.38□□□□□ -1.71
NUP88-213ENST00000576862 CEACAM4O75871 244 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 PRKAR1AP10644 381 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 ATP6V1B1P15313 513 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 PTAFRP25105 342 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 DUTP33316 252 aaKnown RBP4.38□□□□□ -1.71
NUP88-213ENST00000576862 GMPSP49915 693 aaPredicted RBP4.38□□□□□ -1.71
NUP88-213ENST00000576862 ZNF41P51814 821 aaPredicted RBP4.38□□□□□ -1.71
NUP88-213ENST00000576862 OR1D5P58170 312 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 IRX4P78413 519 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 C6orf136Q5SQH8 315 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 CYB5D1Q6P9G0 228 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 SUSD1Q6UWL2 747 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 FRRS1Q6ZNA5 592 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 SLC24A5Q71RS6 500 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 ABI3BPQ7Z7G0 1075 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 Q8NBF4 154 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 KIF18AQ8NI77 898 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 PYCR2Q96C36 320 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 PAIP2Q9BPZ3 127 aaKnown RBP4.38□□□□□ -1.71
NUP88-213ENST00000576862 LRRC61Q9BV99 259 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 GTPBP2Q9BX10 602 aaKnown RBP4.38□□□□□ -1.71
NUP88-213ENST00000576862 UBXN6Q9BZV1 441 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 PHPT1Q9NRX4 125 aaPredicted RBP4.38□□□□□ -1.71
NUP88-213ENST00000576862 MYH15Q9Y2K3 1946 aa4.38□□□□□ -1.71
NUP88-213ENST00000576862 ARHGEF28Q8N1W1 1705 aaKnown RBP4.38□□□□□ -1.71
NUP88-213ENST00000576862 CPS1P31327 1500 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 FAM25EA8MYX2 175 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 KIF5CO60282 957 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 PRAF2O60831 178 aa4.37□□□□□ -1.71
NUP88-213ENST00000576862 RPS2P15880 293 aaKnown RBP4.37□□□□□ -1.71
NUP88-213ENST00000576862 TRPC1P48995 793 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms