RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NRROSQ86YC3 692 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 SLC15A3Q8IY34 581 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ADGRF3Q8IZF5 1079 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ZCCHC7Q8N3Z6 543 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 FBXO27Q8NI29 283 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 CEP76Q8TAP6 659 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 RLN3Q8WXF3 142 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 RSC1A1Q92681 617 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 NELL1Q92832 810 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 RERGQ96A58 199 aaPredicted RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 VPS33AQ96AX1 596 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 PPCDCQ96CD2 204 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ZNF837Q96EG3 531 aaPredicted RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 RSRC1Q96IZ7 334 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 TEX37Q96LM6 180 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 HSPA12BQ96MM6 686 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 NECAB3Q96P71 396 aaPredicted RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 TSSK3Q96PN8 268 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 CD180Q99467 661 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 KCTD14Q9BQ13 255 aaPredicted RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 DPH7Q9BTV6 452 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 THUMPD3Q9BV44 507 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 DUSP26Q9BV47 211 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ACAT2Q9BWD1 397 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 MS4A8Q9BY19 250 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 REXO4Q9GZR2 422 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 CHRNA10Q9GZZ6 450 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 RAB33BQ9H082 229 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ABCG4Q9H172 646 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ALG2Q9H553 416 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 NANOGQ9H9S0 305 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 CLK4Q9HAZ1 481 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 MIEF1Q9NQG6 463 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 C8orf4Q9NR00 106 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ZSCAN32Q9NX65 697 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 THUMPD1Q9NXG2 353 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 MS4A12Q9NXJ0 267 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 TAS2R7Q9NYW3 318 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ACTR10Q9NZ32 417 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 SCHIP1Q9P0W5 487 aaPredicted RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 EPHA6Q9UF33 1036 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 FBXO4Q9UKT5 387 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 PLAGL1Q9UM63 463 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 VPS4AQ9UN37 437 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 DLGAP4Q9Y2H0 992 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 PLEKHM1Q9Y4G2 1056 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 SPACA6W5XKT8 324 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 A0A0J9YY10 115 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 OR2A25A4D2G3 310 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 LRIT2A6NDA9 550 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 LILRA5A6NI73 299 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 NVLO15381 856 aaKnown RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 NDUFS4O43181 175 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 AQP9O43315 295 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 HNRNPRO43390 633 aaKnown RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 SRPX2O60687 465 aaPredicted RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 PDE5AO76074 875 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 SCELO95171 688 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 KRT75O95678 551 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 KLK1P06870 262 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 ABCB1P08183 1280 aaPredicted RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 ALPPL2P10696 532 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 DDCP20711 480 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 PSMA4P25789 261 aaKnown RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 VHLP40337 213 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 GPR3P46089 330 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 RXRGP48443 463 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 ANXA11P50995 505 aaKnown RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 LIPEQ05469 1076 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 C2orf80Q0P641 193 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 ABHD18Q0P651 414 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 PDE7AQ13946 482 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 GPR18Q14330 331 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 MLC1Q15049 377 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 FXNQ16595 210 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 PGS1Q32NB8 556 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 RUNDC3AQ59EK9 446 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 PAGE3Q5JUK9 113 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 FAM71E1Q6IPT2 247 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 LCN8Q6JVE9 175 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 DUS1LQ6P1R4 473 aaKnown RBP7.61□□□□□ -1.19
VPS39-213ENST00000570062 BHLHB9Q6PI77 547 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 SLC2A7Q6PXP3 512 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 LAYNQ6UX15 382 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 DLEU7Q6UYE1 221 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 ABHD13Q7L211 337 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 ARMCX6Q7L4S7 300 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 ASPGQ86U10 573 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 SERPINA11Q86U17 422 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 SLC30A8Q8IWU4 369 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS39-213ENST00000570062 OR2L5Q8NG80 312 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 ZFP28Q8NHY6 868 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS39-213ENST00000570062 DNAJB14Q8TBM8 379 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 NT5CQ8TCD5 201 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 C16orf78Q8WTQ4 265 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 WDR60Q8WVS4 1066 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 GAL3ST3Q96A11 431 aa7.61□□□□□ -1.19
VPS39-213ENST00000570062 TMEM125Q96AQ2 219 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms