RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CEP295NLQ96MC4 621 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 GFM1Q96RP9 751 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 NOX1Q9Y5S8 564 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 CCDC88CQ9P219 2028 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 CCRL2O00421 344 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 DSCR3O14972 297 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 C8GP07360 202 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 GALTP07902 379 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 PTNP21246 168 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 GABRR2P28476 465 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 TNFSF8P32971 234 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 PTPN5P54829 565 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 MBTPS1Q14703 1052 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 NXNL2Q5VZ03 156 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 CHST9Q7L1S5 443 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 ADCK2Q7Z695 626 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 DNAJB7Q7Z6W7 309 aaPredicted RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 TESCQ96BS2 214 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 CTRCQ99895 268 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 BCL7BQ9BQE9 202 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 NDUFAF4Q9P032 175 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 MAN2B2Q9Y2E5 1009 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 NAALAD2Q9Y3Q0 740 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 PCDHGB1Q9Y5G3 927 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 KCNE2Q9Y6J6 123 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 OTOFQ9HC10 1997 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 MYO16Q9Y6X6 1858 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 CCDC182A6NF36 153 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 PRAMEF4O60810 478 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 CDRT1O95170 752 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 HNRNPFP52597 415 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 PTGES3Q15185 160 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 TBCEQ15813 527 aaPredicted RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 RPS26P11Q5JNZ5 115 aaPredicted RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 PRAMEF9Q5VWM5 478 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 OTOP2Q7RTS6 562 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 OR2AP1Q8NGE2 309 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 EMILIN2Q9BXX0 1053 aa13.93□□□□□ -0.18
VPS35-210ENST00000568784 RPRD1BQ9NQG5 326 aaKnown RBP13.93□□□□□ -0.18
VPS35-210ENST00000568784 GON4LQ3T8J9 2241 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 KMOO15229 486 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 GUCY1B2O75343 617 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 ETHE1O95571 254 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 PTTG1O95997 202 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 KLK1P06870 262 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 ATP1B2P14415 290 aaPredicted RBP13.92□□□□□ -0.18
VPS35-210ENST00000568784 C1DQ13901 141 aaKnown RBP13.92□□□□□ -0.18
VPS35-210ENST00000568784 MACC1Q6ZN28 852 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TRAPPC5Q8IUR0 188 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 IQCF1Q8N6M8 205 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TCEANCQ8N8B7 351 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 HUS1BQ8NHY5 278 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 SYT17Q9BSW7 474 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 MTG2Q9H4K7 406 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 C5AR2Q9P296 337 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 YIPF1Q9Y548 306 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TMEM202A6NGA9 273 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 FADS2P1A8MWK0 482 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 PLK4O00444 970 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 GAPDHSO14556 408 aaPredicted RBP13.92□□□□□ -0.18
VPS35-210ENST00000568784 SLC16A8O95907 504 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 IFNW1P05000 195 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 JUPP14923 745 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 RPS3P23396 243 aaKnown RBP eCLIP13.92□□□□□ -0.182e-6■■■□□ 17.7
VPS35-210ENST00000568784 MAGEA2P43356 314 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TAS2R50P59544 299 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 HBA1P69905 142 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 LMAN2Q12907 356 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 MTA1Q13330 715 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 LRRC26Q2I0M4 334 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 ANXA8L1Q5VT79 327 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 CACUL1Q86Y37 369 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 MMAAQ8IVH4 418 aaKnown RBP13.92□□□□□ -0.18
VPS35-210ENST00000568784 DTX3Q8N9I9 347 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 SUV39H2Q9H5I1 410 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 COMMD3Q9UBI1 195 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 NUFIP1Q9UHK0 495 aaKnown RBP13.92□□□□□ -0.18
VPS35-210ENST00000568784 CLEC2DQ9UHP7 191 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 GREB1Q4ZG55 1949 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 DOCK4Q8N1I0 1966 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 GPX2P18283 190 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 GZMMP51124 257 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 ACLYP53396 1101 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 ALDH6A1Q02252 535 aaKnown RBP13.92□□□□□ -0.18
VPS35-210ENST00000568784 AGAP6Q5VW22 663 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TRIM40Q6P9F5 258 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 DPY19L3Q6ZPD9 716 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TPRG1Q6ZUI0 275 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TMCO2Q7Z6W1 182 aaPredicted RBP13.92□□□□□ -0.18
VPS35-210ENST00000568784 KRT73Q86Y46 540 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 ZFP41Q8N8Y5 198 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 DCAF4L2Q8NA75 395 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TMEM169Q96HH4 297 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 AGAP4Q96P64 663 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 SORBS1Q9BX66 1292 aaKnown RBP13.92□□□□□ -0.18
VPS35-210ENST00000568784 HOXD1Q9GZZ0 328 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 TRPV5Q9NQA5 729 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 MARCH5Q9NX47 278 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 MKLN1Q9UL63 735 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 N6AMT1Q9Y5N5 214 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms