RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 DNAJC22Q8N4W6 341 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 ZNF655Q8N720 491 aaPredicted RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 RBM15BQ8NDT2 890 aaKnown RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 TMEM74Q96NL1 305 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 QRFPRQ96P65 431 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 ARHGAP10A1A4S6 786 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 CCDC154A6NI56 674 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 BBIP1A8MTZ0 92 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 ANGPT2O15123 496 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 AKAP10O43572 662 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 ZBTB11O95625 1053 aaPredicted RBP29.11■■■□□ 2.25
CTCF-203ENST00000566078 RPLP0P05388 317 aaKnown RBP29.11■■■□□ 2.25
CTCF-203ENST00000566078 NUDT2P50583 147 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 ABHD17CQ6PCB6 329 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 ASRGL1Q7L266 308 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 KIF2BQ8N4N8 673 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 SRFBP1Q8NEF9 429 aaKnown RBP29.11■■■□□ 2.25
CTCF-203ENST00000566078 TSPEARQ8WU66 669 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 GAL3ST3Q96A11 431 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 VPS33AQ96AX1 596 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 KCNC2Q96PR1 638 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 BTBD10Q9BSF8 475 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 PDE7BQ9NP56 450 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 SLC52A3Q9NQ40 469 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 TAS2R1Q9NYW7 299 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 ADAM29Q9UKF5 820 aa29.11■■■□□ 2.25
CTCF-203ENST00000566078 ASCC3Q8N3C0 2202 aaKnown RBP29.11■■■□□ 2.25
CTCF-203ENST00000566078 FLRT2O43155 660 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 KLHL18O94889 574 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 RAB8AP61006 207 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 CCL7P80098 99 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 TGM3Q08188 693 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 SPEM2Q0P670 501 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 RIMKLAQ8IXN7 391 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 CSNK1A1LQ8N752 337 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 ZCCHC10Q8TBK6 192 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 C16orf78Q8WTQ4 265 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 TEFMQ96QE5 360 aaKnown RBP29.1■■■□□ 2.25
CTCF-203ENST00000566078 KCNH6Q9H252 994 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 SYNDIG1Q9H7V2 258 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 EFCAB1Q9HAE3 211 aa29.1■■■□□ 2.25
CTCF-203ENST00000566078 ATXN7L1Q9ULK2 861 aaPredicted RBP29.1■■■□□ 2.25
CTCF-203ENST00000566078 PRMT3O60678 531 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 ZNF888P0CJ79 500 aaPredicted RBP29.09■■■□□ 2.25
CTCF-203ENST00000566078 PRPS1L1P21108 318 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 ARFIP1P53367 373 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 FAM174BQ3ZCQ3 159 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 ZNF793Q6ZN11 406 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 DBX2Q6ZNG2 339 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 MCATQ8IVS2 390 aaKnown RBP29.09■■■□□ 2.25
CTCF-203ENST00000566078 CNDP2Q96KP4 475 aaKnown RBP29.09■■■□□ 2.25
CTCF-203ENST00000566078 EDEM2Q9BV94 578 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 DDX31Q9H8H2 851 aaKnown RBP29.09■■■□□ 2.25
CTCF-203ENST00000566078 MYNNQ9NPC7 610 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 A0A1W2PP18 115 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 MRASO14807 208 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 GYG2O15488 501 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 MAP3K7O43318 606 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 SEPHS1P49903 392 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 DGKQP52824 942 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 MAPK12P53778 367 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 SLC25A3Q00325 362 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 SPANXN4Q5MJ08 99 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 PRSS42Q7Z5A4 293 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 UTP15Q8TED0 518 aaKnown RBP29.09■■■□□ 2.25
CTCF-203ENST00000566078 ATOH1Q92858 354 aaPredicted RBP29.09■■■□□ 2.25
CTCF-203ENST00000566078 TBCDQ9BTW9 1192 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 NLNQ9BYT8 704 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 CHRNA10Q9GZZ6 450 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 LRRN3Q9H3W5 708 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 PRDM7Q9NQW5 492 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 NDUFAF1Q9Y375 327 aa29.09■■■□□ 2.25
CTCF-203ENST00000566078 A0A1W2PQM1 296 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 DYTNA2CJ06 578 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 ASPDHA6ND91 283 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 URADA6NGE7 173 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 CPOXP36551 454 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 HPCAL1P37235 193 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 C21orf58P58505 322 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 TAS2R50P59544 299 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 SQSTM1Q13501 440 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 RETREG3Q86VR2 466 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 TMEM132CQ8N3T6 1108 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 AMER3Q8N944 861 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 OR8K5Q8NH50 307 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 TESCQ96BS2 214 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 C1orf21Q9H246 121 aa29.08■■■□□ 2.25
CTCF-203ENST00000566078 A0A0A6YYD5 115 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 A8MU76 341 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 CDX4O14627 284 aaPredicted RBP29.07■■■□□ 2.24
CTCF-203ENST00000566078 CFLARO15519 480 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 ZSCAN9O15535 394 aaPredicted RBP29.07■■■□□ 2.24
CTCF-203ENST00000566078 CPNE6O95741 557 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 LDOC1O95751 146 aaPredicted RBP29.07■■■□□ 2.24
CTCF-203ENST00000566078 ITGAXP20702 1163 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 ARL4DP49703 201 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 TMEM71Q6P5X7 295 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 PUM2Q8TB72 1066 aaKnown RBP eCLIP29.07■■■□□ 2.249e-10■■■■■ 47.4
CTCF-203ENST00000566078 RHBDD1Q8TEB9 315 aa29.07■■■□□ 2.24
CTCF-203ENST00000566078 STARD8Q92502 1023 aa29.07■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms