RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CYP4X1Q8N118 509 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 SNX31Q8N9S9 440 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 ST6GALNAC3Q8NDV1 305 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 TTLQ8NG68 377 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 TSLPQ969D9 159 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 KIAA1191Q96A73 305 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 SMIM10Q96HG1 83 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 FAR2Q96K12 515 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 UBXN10Q96LJ8 280 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 ZNF354BQ96LW1 612 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 PTCHD1Q96NR3 888 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 GPRC5BQ9NZH0 403 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 DOPEY2Q9Y3R5 2298 aa19.51■□□□□ 0.71
CLN3-219ENST00000565778 ESYT3A0FGR9 886 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 ANKDD1BA6NHY2 528 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 PRMT3O60678 531 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 STK16O75716 305 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 RNH1P13489 461 aaKnown RBP19.5■□□□□ 0.71
CLN3-219ENST00000565778 SLMAPQ14BN4 828 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 ZKSCAN8Q15776 578 aaPredicted RBP19.5■□□□□ 0.71
CLN3-219ENST00000565778 BCORP1Q8N888 145 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 STAG3L4Q8TBR4 150 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 MRRFQ96E11 262 aaKnown RBP19.5■□□□□ 0.71
CLN3-219ENST00000565778 C16orf45Q96MC5 204 aaPredicted RBP19.5■□□□□ 0.71
CLN3-219ENST00000565778 TMEM79Q9BSE2 394 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 RNF32Q9H0A6 362 aa19.5■□□□□ 0.71
CLN3-219ENST00000565778 OR5H15A6NDH6 313 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 FAM227AF5H4B4 570 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 CCNT2O60583 730 aaKnown RBP19.49■□□□□ 0.71
CLN3-219ENST00000565778 DDAH2O95865 285 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 CRABP2P29373 138 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 GMPRP36959 345 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 KCNC1P48547 511 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 BTG2P78543 158 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 ACER2Q5QJU3 275 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 H3F3CQ6NXT2 135 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 CMC1Q7Z7K0 106 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 TBC1D1Q86TI0 1168 aaPredicted RBP19.49■□□□□ 0.71
CLN3-219ENST00000565778 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLN3-219ENST00000565778 ZNF592Q92610 1267 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 EXT2Q93063 718 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 ALG9Q9H6U8 611 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 NT5DC2Q9H857 520 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 NMRAL1Q9HBL8 299 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 PRM3Q9NNZ6 103 aa19.49■□□□□ 0.71
CLN3-219ENST00000565778 PTBP2Q9UKA9 531 aaKnown RBP19.49■□□□□ 0.71
CLN3-219ENST00000565778 EDN3P14138 238 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 TFEBP19484 476 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 GUCY2DQ02846 1103 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 NAB1Q13506 487 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 XKR6Q5GH73 641 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 PITHD1Q9GZP4 211 aaPredicted RBP19.48■□□□□ 0.71
CLN3-219ENST00000565778 AICDAQ9GZX7 198 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 MMP25Q9NPA2 562 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 OLAHQ9NV23 265 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 ABI3Q9P2A4 366 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 SLC5A6Q9Y289 635 aa19.48■□□□□ 0.71
CLN3-219ENST00000565778 CNTRLQ7Z7A1 2325 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 A0A0G2JN53 185 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 LRIT2A6NDA9 550 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 ERI3O43414 337 aaKnown RBP19.47■□□□□ 0.71
CLN3-219ENST00000565778 PRAMEF2O60811 474 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 RASAL1O95294 804 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 LTA4HP09960 611 aaKnown RBP19.47■□□□□ 0.71
CLN3-219ENST00000565778 SLC35E2BP0CK96 405 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 MAOAP21397 527 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 GSTM2P28161 218 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 SLC26A5P58743 744 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 TAS2R50P59544 299 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 DOC2AQ14183 400 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 EFTUD2Q15029 972 aaKnown RBP eCLIP19.47■□□□□ 0.713e-6■■■■□ 20.6
CLN3-219ENST00000565778 PDK4Q16654 411 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 HIST2H2ACQ16777 129 aaPredicted RBP19.47■□□□□ 0.71
CLN3-219ENST00000565778 MEP1AQ16819 746 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 HIST2H2AA3Q6FI13 130 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 QSOX2Q6ZRP7 698 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 ISCA2Q86U28 154 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 CRLF3Q8IUI8 442 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 BEST3Q8N1M1 668 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 CA13Q8N1Q1 262 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 PDPRQ8NCN5 879 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 ARMC2Q8NEN0 867 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 GAL3ST3Q96A11 431 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 MS4A6EQ96DS6 147 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 PTCD3Q96EY7 689 aaKnown RBP19.47■□□□□ 0.71
CLN3-219ENST00000565778 SEC16BQ96JE7 1060 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 C5orf34Q96MH7 638 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 CD244Q9BZW8 370 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 EHD1Q9H4M9 534 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 PRDM9Q9NQV7 894 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 ERRFI1Q9UJM3 462 aaPredicted RBP19.47■□□□□ 0.71
CLN3-219ENST00000565778 ZNF490Q9ULM2 529 aaPredicted RBP19.47■□□□□ 0.71
CLN3-219ENST00000565778 OSGIN2Q9Y236 505 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 ACOT9Q9Y305 439 aa19.47■□□□□ 0.71
CLN3-219ENST00000565778 LRRK2Q5S007 2527 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 A8MUA0 341 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 C4orf51C9J302 202 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 CLEC3AO75596 197 aa19.46■□□□□ 0.71
CLN3-219ENST00000565778 HNRNPH1P31943 449 aaKnown RBP19.46■□□□□ 0.71
CLN3-219ENST00000565778 HPDP32754 393 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms