RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NCF1P14598 390 aaPredicted RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 HNRNPH1P31943 449 aaKnown RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 SLC26A5P58743 744 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 BTG2P78543 158 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 PCDH1Q08174 1060 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 RBBP5Q15291 538 aaKnown RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 EXT1Q16394 746 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 BTBD16Q32M84 506 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 UBAP2Q5T6F2 1119 aaKnown RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 MFSD4BQ5TF39 518 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 SULT1C3Q6IMI6 304 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 ADNP2Q6IQ32 1131 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 PAPD4Q6PIY7 484 aaKnown RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 QSOX2Q6ZRP7 698 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 ABHD13Q7L211 337 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 GPSM1Q86YR5 675 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 CA13Q8N1Q1 262 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 TCAIMQ8N3R3 496 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 TBC1D19Q8N5T2 526 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 NFAM1Q8NET5 270 aaPredicted RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 FBF1Q8TES7 1133 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 ESAMQ96AP7 390 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 MS4A6EQ96DS6 147 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 SEC16BQ96JE7 1060 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 QRFPRQ96P65 431 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 LRRC1Q9BTT6 524 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 PITHD1Q9GZP4 211 aaPredicted RBP13.97□□□□□ -0.17
CLN3-213ENST00000565047 EHD1Q9H4M9 534 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 IGSF5Q9NSI5 407 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 DOPEY1Q5JWR5 2465 aa13.97□□□□□ -0.17
CLN3-213ENST00000565047 TCRBV16S1A1N1A0A5B0 115 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 ESYT3A0FGR9 886 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 DYTNA2CJ06 578 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 OR5H15A6NDH6 313 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 FAM227AF5H4B4 570 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 WISP2O76076 250 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 DDAH2O95865 285 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 SPRP35270 261 aaPredicted RBP13.96□□□□□ -0.17
CLN3-213ENST00000565047 HNF4AP41235 474 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 CASP2P42575 452 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 HSPA7P48741 367 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 SLC12A2P55011 1212 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 SLC7A5Q01650 507 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 RUNX2Q13950 521 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 SLBPQ14493 270 aaKnown RBP eCLIP13.96□□□□□ -0.17
CLN3-213ENST00000565047 EFTUD2Q15029 972 aaKnown RBP eCLIP13.96□□□□□ -0.173e-6■■■■□ 20.6
CLN3-213ENST00000565047 INAQ16352 499 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 ACER2Q5QJU3 275 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 TMIGD1Q6UXZ0 262 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 FRA10AC1Q70Z53 315 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 CMC1Q7Z7K0 106 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 CRLF3Q8IUI8 442 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 ARMC10Q8N2F6 343 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 PPM1NQ8N819 430 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 ATOH8Q96SQ7 321 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 CAPS2Q9BXY5 557 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 RHBGQ9H310 441 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 NECTIN3Q9NQS3 549 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 DNAJC11Q9NVH1 559 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 TXNDC16Q9P2K2 825 aa13.96□□□□□ -0.17
CLN3-213ENST00000565047 PLEKHB1Q9UF11 243 aaPredicted RBP13.96□□□□□ -0.17
CLN3-213ENST00000565047 URADA6NGE7 173 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 A8MUI8 341 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 CLEC3AO75596 197 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 STK16O75716 305 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 CLDN1O95832 211 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 MTHFD2P13995 350 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 JAK1P23458 1154 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 GSTM2P28161 218 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 OR4D2P58180 307 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 ZNF33BQ06732 778 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 DOC2AQ14183 400 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 TOR1AIP1Q5JTV8 583 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 ABHD17BQ5VST6 288 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 FCRLBQ6BAA4 426 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 HIST2H2BCQ6DN03 193 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 RELL1Q8IUW5 271 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 SCUBE1Q8IWY4 988 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 CTAGE3PQ8IX95 158 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 CENPLQ8N0S6 344 aaPredicted RBP13.95□□□□□ -0.18
CLN3-213ENST00000565047 BEST3Q8N1M1 668 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 BCORP1Q8N888 145 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 MDS2Q8NDY4 140 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 TTLQ8NG68 377 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 NR4A3Q92570 626 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 LPAR4Q99677 370 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 CD244Q9BZW8 370 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 SLC5A6Q9Y289 635 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 PCDHGB6Q9Y5F9 930 aa13.95□□□□□ -0.18
CLN3-213ENST00000565047 TGFBR3LH3BV60 316 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 PRMT3O60678 531 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 PRAMEF2O60811 474 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 B4GALT2O60909 372 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 H2AFYO75367 372 aaKnown RBP13.94□□□□□ -0.18
CLN3-213ENST00000565047 STSP08842 583 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 RNH1P13489 461 aaKnown RBP13.94□□□□□ -0.18
CLN3-213ENST00000565047 MAOAP21397 527 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 MST1P26927 711 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 CRABP2P29373 138 aa13.94□□□□□ -0.18
CLN3-213ENST00000565047 STX2P32856 288 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms