RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 EDRF1Q3B7T1 1238 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 RUNDC3AQ59EK9 446 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 BEX5Q5H9J7 111 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 C3orf38Q5JPI3 329 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PLEKHS1Q5SXH7 462 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 TMEM63BQ5T3F8 832 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 DDI2Q5TDH0 399 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ELP2Q6IA86 826 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ANO7Q6IWH7 933 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 CLEC9AQ6UXN8 241 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ZNF66Q6ZN08 573 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 TRILQ7L0X0 811 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 C1QL2Q7Z5L3 287 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 NET1Q7Z628 596 aaPredicted RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 ADGRA1Q86SQ6 560 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SYVN1Q86TM6 617 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 CYP4Z1Q86W10 505 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 YAF2Q8IY57 180 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 KATNAL2Q8IYT4 538 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 THEM5Q8N1Q8 247 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 MINDY1Q8N5J2 469 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PNLDC1Q8NA58 520 aaKnown RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 DNAJB14Q8TBM8 379 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 DTX3LQ8TDB6 740 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 BORCS5Q969J3 196 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 YIPF5Q969M3 257 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 MARC2Q969Z3 335 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 S100PBPQ96BU1 408 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 TAMM41Q96BW9 452 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 C18orf8Q96DM3 657 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 MTBPQ96DY7 904 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PDXPQ96GD0 296 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 FAM84BQ96KN1 310 aaPredicted RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 C5orf34Q96MH7 638 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ZNF778Q96MU6 729 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 C12orf57Q99622 126 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PKP2Q99959 881 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PELOQ9BRX2 385 aaKnown RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 NAA11Q9BSU3 229 aaPredicted RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 COLEC11Q9BWP8 271 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 VN1R3Q9BXE9 311 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PARD6GQ9BYG4 376 aaPredicted RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 FAM83DQ9H4H8 585 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 RGCCQ9H4X1 137 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 CNOT10Q9H9A5 744 aaKnown RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 VIPAS39Q9H9C1 493 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PLGRKTQ9HBL7 147 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ADAP2Q9NPF8 381 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 TRIM36Q9NQ86 728 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 HCFC1R1Q9NWW0 138 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 CNIH4Q9P003 139 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 COL20A1Q9P218 1284 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 MGAT4CQ9UBM8 478 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 WNT16Q9UBV4 365 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ZNF70Q9UC06 446 aaPredicted RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 ARMCX3Q9UH62 379 aaPredicted RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 TUBE1Q9UJT0 475 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SARDHQ9UL12 918 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 SLC12A4Q9UP95 1085 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 TDRKHQ9Y2W6 561 aaKnown RBP4.89□□□□□ -1.63
VPS35-205ENST00000563984 MAB21L2Q9Y586 359 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 PFASO15067 1338 aa4.89□□□□□ -1.63
VPS35-205ENST00000563984 ABCA10Q8WWZ4 1543 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 A0A0U1RQS6 177 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CBY3A6NI87 242 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 AQP7P3A6NL99 342 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 AQP12BA6NM10 295 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 WASHC1A8K0Z3 465 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 GABRR3A8MPY1 467 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 PDZK1P1A8MUH7 402 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 LINC00587B1AMM8 73 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 WASH3PC4AMC7 463 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 LRRN3E7EW58 273 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 H7C4K7 107 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 LGALS8O00214 317 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 MDM4O15151 490 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 TOX3O15405 576 aaPredicted RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 NUPL2O15504 423 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 HSPA12AO43301 675 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 TBX19O60806 448 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 HSF2BPO75031 334 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 FAM155BO75949 473 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 FCER2P06734 321 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 SBK2P0C263 348 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 IQCF3P0C7M6 154 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 CYP2D6P10635 497 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 SRMP19623 302 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 RBL1P28749 1068 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 UQCRC1P31930 480 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 SFNP31947 248 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 MAGEA6P43360 314 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 PTDSS1P48651 473 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 MTHFSP49914 203 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 KHKP50053 298 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 MAPK12P53778 367 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 RAD23BP54727 409 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 AP3S2P59780 193 aa4.88□□□□□ -1.63
VPS35-205ENST00000563984 RPS16P62249 146 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 SNTB2Q13425 540 aaKnown RBP4.88□□□□□ -1.63
VPS35-205ENST00000563984 PEX6Q13608 980 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms