RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 GNG8Q9UK08 70 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 IFT52Q9Y366 437 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 PCDHB14Q9Y5E9 798 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 FER1L4A9Z1Z3 1794 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 HCKP08631 526 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 ATP6AP1Q15904 470 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 ZNF678Q5SXM1 525 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 TXNRD3NBQ6F5E7 133 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 C2CD4AQ8NCU7 369 aaPredicted RBP12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 SUN3Q8TAQ9 357 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 PREBQ9HCU5 417 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 CRTAC1Q9NQ79 661 aa12.78□□□□□ -0.36
CSPG4P11-201ENST00000560634 C9IYK1 514 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 J3KR12 359 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 SCGB1D2O95969 90 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 ZNF8P17098 575 aaPredicted RBP12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 RBMXP38159 391 aaKnown RBP12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 GJA9P57773 515 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 NPY5RQ15761 445 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 LRRC73Q5JTD7 316 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 C6orf89Q6UWU4 347 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 DCAF4L2Q8NA75 395 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 TMEM41AQ96HV5 264 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 ACTR6Q9GZN1 396 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 GKN1Q9NS71 199 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 GRHPRQ9UBQ7 328 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 KCNIP3Q9Y2W7 256 aa12.77□□□□□ -0.36
CSPG4P11-201ENST00000560634 BORCS7-ASMTA0A0B4J1R7 106 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 EDDM13A0A1B0GTR0 161 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 HYKKA2RU49 373 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 NRP1O14786 923 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 BCKDHAP12694 445 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 SEC13P55735 322 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 GRIK2Q13002 908 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 SPRYD7Q5W111 196 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 FOXRED2Q8IWF2 684 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 BBS10Q8TAM1 723 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 KLK6Q92876 244 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 FBXL20Q96IG2 436 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 TSGA13Q96PP4 275 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 NPY6RQ99463 290 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 NSUN3Q9H649 340 aaKnown RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 CCDC86Q9H6F5 360 aaKnown RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 ZNF395Q9H8N7 513 aaPredicted RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 SLC2A6Q9UGQ3 507 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 NDRG2Q9UN36 371 aaKnown RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 HSPA12AO43301 675 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 TNFP01375 233 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 MT-ND2P03891 347 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 CHRM1P11229 460 aaPredicted RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 KCNE1P15382 129 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 USF2Q15853 346 aaPredicted RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 HSD17B12Q53GQ0 312 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 PLEKHS1Q5SXH7 462 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 TMEM164Q5U3C3 297 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 KCTD18Q6PI47 426 aaPredicted RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 BAIAP2L2Q6UXY1 529 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 NAPRTQ6XQN6 538 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 ZNF550Q7Z398 422 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 PIM3Q86V86 326 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 OR4C15Q8NGM1 316 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 OR9A1PQ8NGU1 263 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 MCHR1Q99705 422 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 TMEM175Q9BSA9 504 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 DLGAP4Q9Y2H0 992 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 MUSKO15146 869 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 KDELR3O43731 214 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 OAZ2O95190 189 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 CLDN7O95471 211 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 DLDP09622 509 aaKnown RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 GGT5P36269 586 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 CDKN1CP49918 316 aaPredicted RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 NRLP54845 237 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 RPS3AP61247 264 aaKnown RBP12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 S100A12P80511 92 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 SEMG2Q02383 582 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 FADDQ13158 208 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 LRRC66Q68CR7 880 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 RPL13AP3Q6NVV1 102 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 CCDC28AQ8IWP9 274 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 NSMAFQ92636 917 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 REEP4Q9H6H4 257 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 DNAJC27Q9NZQ0 273 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 LAMP5Q9UJQ1 280 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 PCDHGA2Q9Y5H1 932 aa12.77□□□□□ -0.37
CSPG4P11-201ENST00000560634 A0A1W2PRU2 124 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 VILLO15195 856 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 RP2O75695 350 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 SOX30O94993 753 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 GKN3PP0CG01 181 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 ENDOUP21128 410 aaKnown RBP12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 PRKACGP22612 351 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 RPS3P23396 243 aaKnown RBP eCLIP12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 ACVRL1P37023 503 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 MLLT3P42568 568 aaPredicted RBP12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 ACTC1P68032 377 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 ACTA1P68133 377 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 GINS1Q14691 196 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 C6orf136Q5SQH8 315 aa12.76□□□□□ -0.37
CSPG4P11-201ENST00000560634 FCAMRQ8WWV6 532 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms