RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	MESP1	Q9BRJ9	268 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	WDR83	Q9BRX9	315 aa	Known RBP	13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	ROGDI	Q9GZN7	287 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	PRM3	Q9NNZ6	103 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	LANCL2	Q9NS86	450 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	PLA2G3	Q9NZ20	509 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	SPACA6	W5XKT8	324 aa		13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	SPEN	Q96T58	3664 aa	Known RBP	13.25	□□□□□ -0.29
TPM1-223	ENST00000560445	SCN3A	Q9NY46	2000 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	UNC79	Q9P2D8	2635 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	FCHO1	O14526	889 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	LRRTM2	O43300	516 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	B3GALT2	O43825	422 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	CLEC3A	O75596	197 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	CDC123	O75794	336 aa	Predicted RBP	13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	EEF1D	P29692	281 aa	Known RBP	13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	SERPINB1	P30740	379 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	SLC6A12	P48065	614 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	SLC26A5	P58743	744 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	RAB10	P61026	200 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	OC90	Q02509	493 aa	Predicted RBP	13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	PDK4	Q16654	411 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	ZNF766	Q5HY98	468 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	TOR1AIP1	Q5JTV8	583 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	GRTP1	Q5TC63	336 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	TRIM40	Q6P9F5	258 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	TMEM207	Q6UWW9	146 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	CAPN12	Q6ZSI9	719 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	C3orf62	Q6ZUJ4	267 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	TBC1D1	Q86TI0	1168 aa	Predicted RBP	13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	CTAGE3P	Q8IX95	158 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	RHBDF1	Q96CC6	855 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	PTCD3	Q96EY7	689 aa	Known RBP	13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	RBCK1	Q9BYM8	510 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	DPH5	Q9H2P9	285 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	COPS7B	Q9H9Q2	264 aa	Predicted RBP	13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	DNAJC11	Q9NVH1	559 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	SEC14L3	Q9UDX4	400 aa		13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
TPM1-223	ENST00000560445	TCRBV9S1A1T	A0A576	114 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	TP73	O15350	636 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	B4GALT2	O60909	372 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	STK16	O75716	305 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	CCDC166	P0CW27	439 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	CRABP2	P29373	138 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	GGT5	P36269	586 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	HSD17B7	P56937	341 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	RAB8A	P61006	207 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	SLBP	Q14493	270 aa	Known RBP eCLIP	13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	KRTCAP3	Q53RY4	240 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	ZNF324B	Q6AW86	544 aa	Predicted RBP	13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	SYT10	Q6XYQ8	523 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	SLCO4C1	Q6ZQN7	724 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	RAPH1	Q70E73	1250 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	LRRC70	Q7Z2Q7	622 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	ZGRF1	Q86YA3	2104 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	CYP4X1	Q8N118	509 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	EID3	Q8N140	333 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	BEST3	Q8N1M1	668 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	SNX31	Q8N9S9	440 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	STAG3L4	Q8TBR4	150 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	CCT6B	Q92526	530 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	KIAA1191	Q96A73	305 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	TMEM125	Q96AQ2	219 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	CCDC77	Q9BR77	488 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	CENPK	Q9BS16	269 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	TSPYL1	Q9H0U9	437 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	NMRAL1	Q9HBL8	299 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	CD274	Q9NZQ7	290 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	COPG2	Q9UBF2	871 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	RNF112	Q9ULX5	631 aa		13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	DIDO1	Q9BTC0	2240 aa	Known RBP	13.23	□□□□□ -0.29
TPM1-223	ENST00000560445	IGHV3-20	A0A0C4DH32	117 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445		A1L4Q6	167 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	SAGE2P	A6NJ88	616 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	FAM159B	A6NKW6	160 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	GABRR3	A8MPY1	467 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	SYCE1L	A8MT33	242 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	RAD51C	O43502	376 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	CELA2A	P08217	269 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	SSTR1	P30872	391 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	HNF4A	P41235	474 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	PLTP	P55058	493 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	TUBA3C	Q13748	450 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	ZNF460	Q14592	562 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	SLMAP	Q14BN4	828 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	EFTUD2	Q15029	972 aa	Known RBP eCLIP	13.22	□□□□□ -0.29	1e-5	■■■□□ 16.7
TPM1-223	ENST00000560445	OR1C1	Q15619	314 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	ZKSCAN8	Q15776	578 aa	Predicted RBP	13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	ZXDC	Q2QGD7	858 aa	Predicted RBP	13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	TUBA3E	Q6PEY2	450 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	RPTN	Q6XPR3	784 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	CCDC25	Q86WR0	208 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	RPS19BP1	Q86WX3	136 aa	Known RBP	13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	CRLF3	Q8IUI8	442 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	CEP97	Q8IW35	865 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	ZNF595	Q8IYB9	648 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	ANKRD53	Q8N9V6	530 aa		13.22	□□□□□ -0.29
TPM1-223	ENST00000560445	PDPR	Q8NCN5	879 aa		13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms