RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 FER1L5A0AVI2 2057 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 CDC14CA4D256 554 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 GOLGA6L10A6NI86 522 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 SGK494L7N484 410 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 TYROBPO43914 113 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 RDH16O75452 317 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 TBX6O95947 436 aaPredicted RBP12.31□□□□□ -0.44
NEDD8-208ENST00000560427 ENO1P06733 434 aaKnown RBP12.31□□□□□ -0.44
NEDD8-208ENST00000560427 UMODP07911 640 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 PRKAR1AP10644 381 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 PCNAP12004 261 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 HNRNPH1P31943 449 aaKnown RBP12.31□□□□□ -0.44
NEDD8-208ENST00000560427 PKNOX1P55347 436 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 ZNF33BQ06732 778 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 CASP8Q14790 479 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 ZRSR2Q15696 482 aaKnown RBP12.31□□□□□ -0.44
NEDD8-208ENST00000560427 RBBP7Q16576 425 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 CPSF6Q16630 551 aaKnown RBP eCLIP12.31□□□□□ -0.44
NEDD8-208ENST00000560427 UNC50Q53HI1 259 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 LIPMQ5VYY2 423 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 BORAQ6PGQ7 559 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 GPRIN3Q6ZVF9 776 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 PRSS41Q7RTY9 318 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 DTWD1Q8N5C7 304 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 LSM14AQ8ND56 463 aaKnown RBP12.31□□□□□ -0.44
NEDD8-208ENST00000560427 OR4F6Q8NGB9 312 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 HUS1BQ8NHY5 278 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 WDR20Q8TBZ3 569 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 SREK1Q8WXA9 508 aaKnown RBP12.31□□□□□ -0.44
NEDD8-208ENST00000560427 TBCDQ9BTW9 1192 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 TRMOQ9BU70 441 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 CRB3Q9BUF7 120 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 OXSMQ9NWU1 459 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 RNF11Q9Y3C5 154 aa12.31□□□□□ -0.44
NEDD8-208ENST00000560427 ZZEF1O43149 2961 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 CACNA1BQ00975 2339 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 A0A1W2PQ72 361 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 SYNDIG1LA6NDD5 238 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 PEX12O00623 359 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 TM9SF1O15321 606 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 ERI3O43414 337 aaKnown RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 SEMA3DO95025 777 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 BMP10O95393 424 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 ESRRBO95718 433 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 JAK1P23458 1154 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 PTX3P26022 381 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 XCR1P46094 333 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 RRADP55042 308 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 MTTPP55157 894 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 CDH13P55290 713 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 RAB8AP61006 207 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 SNRPNP63162 240 aaKnown RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 KLC1Q07866 573 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 IFT88Q13099 833 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 CUL3Q13618 768 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 RCN2Q14257 317 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 PCLAFQ15004 111 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 CFAP157Q5JU67 520 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 KHDRBS2Q5VWX1 349 aaKnown RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 FRG2Q64ET8 278 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 TTC19Q6DKK2 380 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 ADNP2Q6IQ32 1131 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 ABHD17CQ6PCB6 329 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 FRMD7Q6ZUT3 714 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 MED25Q71SY5 747 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 MRGPREQ86SM8 312 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 APLFQ8IW19 511 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 ZC3H7AQ8IWR0 971 aaKnown RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 TMEM102Q8N9M5 508 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 ARMC2Q8NEN0 867 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 OR51Q1Q8NH59 317 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 TCP10LQ8TDR4 215 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 TRPC4APQ8TEL6 797 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 APOBEC4Q8WW27 367 aaKnown RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 TTC9Q92623 222 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 FAM111AQ96PZ2 611 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 CDK15Q96Q40 435 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 FRG2BQ96QU4 278 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 UBL7Q96S82 380 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 SERINC2Q96SA4 455 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 YIPF2Q9BWQ6 316 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 SLC29A3Q9BZD2 475 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 GSTO2Q9H4Y5 243 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 KLHL31Q9H511 634 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 ELOVL6Q9H5J4 265 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 SOX17Q9H6I2 414 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 COPS7BQ9H9Q2 264 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-208ENST00000560427 PRM3Q9NNZ6 103 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 DMRT3Q9NQL9 472 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 HCN3Q9P1Z3 774 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 SNX6Q9UNH7 406 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 MAN2B2Q9Y2E5 1009 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 SEC16AO15027 2179 aa12.3□□□□□ -0.44
NEDD8-208ENST00000560427 IDSB3KWA1 339 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 B3GALT2O43825 422 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 TRIM13O60858 407 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 SCELO95171 688 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 KRT6AP02538 564 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 KRT6BP04259 564 aa12.29□□□□□ -0.44
NEDD8-208ENST00000560427 RNH1P13489 461 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms