RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 KBTBD12Q3ZCT8 623 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 ACER2Q5QJU3 275 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 ABHD17BQ5VST6 288 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 C1QL3Q5VWW1 255 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 TUBA3EQ6PEY2 450 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 C3orf62Q6ZUJ4 267 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 FRA10AC1Q70Z53 315 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 CCDC25Q86WR0 208 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 ANKRD7Q92527 254 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 EXT2Q93063 718 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 OR1F2PQ96R84 312 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 AIF1LQ9BQI0 150 aa16.65■□□□□ 0.26
HDDC3-205ENST00000559898 ZNF490Q9ULM2 529 aaPredicted RBP16.65■□□□□ 0.26
HDDC3-205ENST00000559898 DIDO1Q9BTC0 2240 aaKnown RBP16.64■□□□□ 0.25
HDDC3-205ENST00000559898 MYOCOSA0A1B0GUC4 107 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 PCDH17O14917 1159 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 PPP2R1BP30154 601 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 CD96P40200 585 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 BTN3A2P78410 334 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 ACTN3Q08043 901 aaPredicted RBP16.64■□□□□ 0.25
HDDC3-205ENST00000559898 CALCOCO2Q13137 446 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 ZKSCAN8Q15776 578 aaPredicted RBP16.64■□□□□ 0.25
HDDC3-205ENST00000559898 SPINK14Q6IE38 97 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 ADAMTSL2Q86TH1 951 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 CYP4X1Q8N118 509 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 BCORP1Q8N888 145 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 BBOF1Q8ND07 529 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 M1APQ8TC57 530 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 C5orf34Q96MH7 638 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 PTCHD1Q96NR3 888 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 POPDC3Q9HBV1 291 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 MMP25Q9NPA2 562 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 KLHL1Q9NR64 748 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 C19orf25Q9UFG5 118 aaPredicted RBP16.64■□□□□ 0.25
HDDC3-205ENST00000559898 CLDN16Q9Y5I7 305 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 KCNE2Q9Y6J6 123 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 DOPEY1Q5JWR5 2465 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 CRYBG3Q68DQ2 2970 aa16.64■□□□□ 0.25
HDDC3-205ENST00000559898 IGKV3D-11A0A0A0MRZ8 115 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 PRAMEF2O60811 474 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 DDAH2O95865 285 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 ICAM2P13598 275 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 AGTR2P50052 363 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 ETF1P62495 437 aaKnown RBP16.63■□□□□ 0.25
HDDC3-205ENST00000559898 ABHD13Q7L211 337 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 FJX1Q86VR8 437 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 CTAGE3PQ8IX95 158 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 PPM1NQ8N819 430 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 MDS2Q8NDY4 140 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 NFAM1Q8NET5 270 aaPredicted RBP16.63■□□□□ 0.25
HDDC3-205ENST00000559898 FBF1Q8TES7 1133 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 SREK1Q8WXA9 508 aaKnown RBP16.63■□□□□ 0.25
HDDC3-205ENST00000559898 CCT6BQ92526 530 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 NR4A3Q92570 626 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 ANP32BQ92688 251 aaKnown RBP16.63■□□□□ 0.25
HDDC3-205ENST00000559898 MS4A6EQ96DS6 147 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 UBXN10Q96LJ8 280 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 QRFPRQ96P65 431 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 CPNE1Q99829 537 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 FAM129AQ9BZQ8 928 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 RNF32Q9H0A6 362 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 CDCP1Q9H5V8 836 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 NSMCE4AQ9NXX6 385 aa16.63■□□□□ 0.25
HDDC3-205ENST00000559898 EIF3HO15372 352 aaKnown RBP eCLIP16.62■□□□□ 0.25
HDDC3-205ENST00000559898 ZG16O60844 167 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 SERPINA6P08185 405 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 CYC1P08574 325 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 GP5P40197 560 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 MAGEA4P43358 317 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 HNMTP50135 292 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 SLC12A2P55011 1212 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 IRF9Q00978 393 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 GUCY2DQ02846 1103 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 DOC2AQ14183 400 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 ZNF766Q5HY98 468 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 MAMDC2Q7Z304 686 aaPredicted RBP16.62■□□□□ 0.25
HDDC3-205ENST00000559898 MAATS1Q7Z4T9 603 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 ZNF227Q86WZ6 799 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 GPSM1Q86YR5 675 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 RNF175Q8N4F7 328 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 TRPV3Q8NET8 790 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 ELP5Q8TE02 316 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 MRRFQ96E11 262 aaKnown RBP16.62■□□□□ 0.25
HDDC3-205ENST00000559898 CSF3RQ99062 836 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 LPAR4Q99677 370 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 TSPAN10Q9H1Z9 355 aaPredicted RBP16.62■□□□□ 0.25
HDDC3-205ENST00000559898 WWOXQ9NZC7 414 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 PTBP2Q9UKA9 531 aaKnown RBP16.62■□□□□ 0.25
HDDC3-205ENST00000559898 CACNA1DQ01668 2161 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 CELSR2Q9HCU4 2923 aa16.62■□□□□ 0.25
HDDC3-205ENST00000559898 TCRBV16S1A1N1A0A5B0 115 aa16.61■□□□□ 0.25
HDDC3-205ENST00000559898 HMX2A2RU54 273 aa16.61■□□□□ 0.25
HDDC3-205ENST00000559898 LRIT2A6NDA9 550 aa16.61■□□□□ 0.25
HDDC3-205ENST00000559898 GABRR3A8MPY1 467 aa16.61■□□□□ 0.25
HDDC3-205ENST00000559898 NDC80O14777 642 aa16.61■□□□□ 0.25
HDDC3-205ENST00000559898 ERI3O43414 337 aaKnown RBP16.61■□□□□ 0.25
HDDC3-205ENST00000559898 PRMT3O60678 531 aa16.61■□□□□ 0.25
HDDC3-205ENST00000559898 SH3BGRLO75368 114 aa16.61■□□□□ 0.25
HDDC3-205ENST00000559898 RASAL1O95294 804 aa16.61■□□□□ 0.25
HDDC3-205ENST00000559898 SLC35E2BP0CK96 405 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms