RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PRAMEF33A0A0G2JMD5 474 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 METTL15A6NJ78 407 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 H0YIV9 168 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 TGM5O43548 720 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 KDM1AO60341 852 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PRAMEF10O60809 474 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 MYO1DO94832 1006 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 TGFB1P01137 390 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CTSLP07711 333 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 HSMCR30P0CW71 290 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ADORA3P0DMS8 318 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 WEE1P30291 646 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 TIA1P31483 386 aaKnown RBP eCLIP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PCGF2P35227 344 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 MAGEA8P43361 318 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PPP5CP53041 499 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 DEFB103AP81534 67 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 FADDQ13158 208 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF404Q494X3 552 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SYTL3Q4VX76 610 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ARSIQ5FYB1 569 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 MPP7Q5T2T1 576 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 AGAP7PQ5VUJ5 663 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 STEAP3Q658P3 488 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 UTS2BQ765I0 119 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ARMCX6Q7L4S7 300 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 LYSMD2Q8IV50 215 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 LGI4Q8N135 537 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 C11orf65Q8NCR3 313 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 WDR48Q8TAF3 677 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF675Q8TD23 568 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CHTF18Q8WVB6 975 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 IPCEF1Q8WWN9 437 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 VWCEQ96DN2 955 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 ABHD8Q96I13 439 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 Q96MT0 163 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PSD2Q9BQI7 771 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CORO1BQ9BR76 489 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SLC35A5Q9BS91 424 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CPEB1Q9BZB8 566 aaKnown RBP7.2□□□□□ -1.26
LIMA1-213ENST00000552720 LINC00597Q9H2U6 94 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 GIN1Q9NXP7 522 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 BTNL2Q9UIR0 455 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 SLC25A13Q9UJS0 675 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 PADI2Q9Y2J8 665 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 MAP4K5Q9Y4K4 846 aa7.2□□□□□ -1.26
LIMA1-213ENST00000552720 CLCA1A8K7I4 914 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 UGDHO60701 494 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CNOT3O75175 753 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 TNFRSF21O75509 655 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 KLHL18O94889 574 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CDK1P06493 297 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 HOXB6P17509 224 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 GABRB1P18505 474 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 GRK3P35626 688 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CTSKP43235 329 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 TMED10P49755 219 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 METAP1P53582 386 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SLC7A9P82251 487 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 ST3GAL4Q11206 333 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SCARB2Q14108 478 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 GRIN2CQ14957 1233 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 RNF130Q86XS8 419 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CLIP4Q8N3C7 705 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 C2orf73Q8N5S3 287 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF740Q8NDX6 193 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 OR4C15Q8NGM1 316 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 TMEM159Q96B96 161 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 COQ8BQ96D53 544 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF558Q96NG5 402 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CHCHD6Q9BRQ6 235 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CCM2Q9BSQ5 444 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CDADC1Q9BWV3 514 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 KLHL25Q9H0H3 589 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 NPDC1Q9NQX5 325 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 RANBP2P49792 3224 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 PTPRSQ13332 1948 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 TRAV19A0A0A6YYK7 116 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 GRM6O15303 877 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CCL16O15467 120 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SNRNP200O75643 2136 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 UPK1BO75841 260 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 KCNK2O95069 426 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 CXCL10P02778 98 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 PABPC1P11940 636 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 HNF4AP41235 474 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 TPTEP56180 551 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 TBPL1P62380 186 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 RPS26P62854 115 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 ELP6Q0PNE2 266 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SELENBP1Q13228 472 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 STARD3Q14849 445 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 TBCEQ15813 527 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SLC5A12Q1EHB4 618 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 HENMT1Q5T8I9 393 aaKnown RBP7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SLCO4C1Q6ZQN7 724 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 LINC00299Q6ZSB3 139 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 SLC46A3Q7Z3Q1 461 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 COMMD6Q7Z4G1 85 aa7.19□□□□□ -1.26
LIMA1-213ENST00000552720 ADIPOR2Q86V24 386 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms