RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 HSPA14Q0VDF9 509 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 MRPL58Q14197 206 aaKnown RBP13.19□□□□□ -0.3
HDAC7-228ENST00000548938 PTGES3Q15185 160 aaKnown RBP13.19□□□□□ -0.3
HDAC7-228ENST00000548938 TMPRSS11AQ6ZMR5 421 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 CHST9Q7L1S5 443 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 RNF130Q86XS8 419 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 C11orf65Q8NCR3 313 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 TRMT61AQ96FX7 289 aaKnown RBP13.19□□□□□ -0.3
HDAC7-228ENST00000548938 SPATA17Q96L03 361 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 ATG10Q9H0Y0 220 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 MBD1Q9UIS9 605 aaPredicted RBP13.19□□□□□ -0.3
HDAC7-228ENST00000548938 KLHL20Q9Y2M5 609 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 LAMA3Q16787 3333 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 HMX3A6NHT5 357 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 PCDH17O14917 1159 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 STC2O76061 302 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 CD22P20273 847 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 CYP2A7P20853 494 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 HNF1BP35680 557 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 TRIM60Q495X7 471 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 COX20Q5RI15 118 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 TTC23LQ6PF05 361 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 ZNF852Q6ZMS4 543 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 ANKS3Q6ZW76 656 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 TSPAN33Q86UF1 283 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 CACTIN-AS1Q8N1I8 211 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 COQ8BQ96D53 544 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 FAM129BQ96TA1 746 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 SRRQ9GZT4 340 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 SNTG1Q9NSN8 517 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 ABCB8Q9NUT2 735 aa13.19□□□□□ -0.3
HDAC7-228ENST00000548938 LAMA2P24043 3122 aaKnown RBP13.18□□□□□ -0.3
HDAC7-228ENST00000548938 GABRR3A8MPY1 467 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 SYN3O14994 580 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 SCAMP2O15127 329 aaKnown RBP13.18□□□□□ -0.3
HDAC7-228ENST00000548938 COCHO43405 550 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 CCNB2O95067 398 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 EOMESO95936 686 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 CKMT1AP12532 417 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 ETFAP13804 333 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 DAB2P98082 770 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 E2F2Q14209 437 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 HKDC1Q2TB90 917 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 IFI44LQ53G44 452 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 PLAG1Q6DJT9 500 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 PRR23CQ6ZRP0 262 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 ZNF438Q7Z4V0 828 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 VRK3Q8IV63 474 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 SLC7A6Q92536 515 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 TCF25Q9BQ70 676 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 SPATA9Q9BWV2 254 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 RETREG1Q9H6L5 497 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 ZNF556Q9HAH1 456 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 DNAJC11Q9NVH1 559 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 NUFIP1Q9UHK0 495 aaKnown RBP13.18□□□□□ -0.3
HDAC7-228ENST00000548938 SCN8AQ9UQD0 1980 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 OR6C75A6NL08 312 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 MYCP01106 439 aaPredicted RBP13.18□□□□□ -0.3
HDAC7-228ENST00000548938 POLR2EP19388 210 aaKnown RBP13.18□□□□□ -0.3
HDAC7-228ENST00000548938 SPAM1P38567 509 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 CRATP43155 626 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 CDC42P60953 191 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 B4GALNT1Q00973 533 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 HYAL2Q12891 473 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 CDKN3Q16667 212 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 ADNP2Q6IQ32 1131 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 NPAS3Q8IXF0 933 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 BHMTQ93088 406 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 P2RY13Q9BPV8 354 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 SLC12A9Q9BXP2 914 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.18□□□□□ -0.31e-6■■■■□ 24.8
HDAC7-228ENST00000548938 GPATCH2Q9NW75 528 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 VPS29Q9UBQ0 182 aa13.18□□□□□ -0.3
HDAC7-228ENST00000548938 HIST1H2AGP0C0S8 130 aaPredicted RBP13.17□□□□□ -0.3
HDAC7-228ENST00000548938 CBSLP0DN79 551 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 JUPP14923 745 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 HIST1H2ADP20671 130 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 CNR2P34972 360 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 CBSP35520 551 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 PSPHP78330 225 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 ACSM2AQ08AH3 577 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 GANABQ14697 944 aaKnown RBP13.17□□□□□ -0.3
HDAC7-228ENST00000548938 TEAD4Q15561 434 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 CDKL4Q5MAI5 379 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 CPTPQ5TA50 214 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 LYPLAL1Q5VWZ2 237 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 ACSM2BQ68CK6 577 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 PTCHD4Q6ZW05 846 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 GPR26Q8NDV2 337 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 CHTF18Q8WVB6 975 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 HIST1H2AHQ96KK5 128 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 HIST1H2AJQ99878 128 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 H2AFJQ9BTM1 129 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 CNOT2Q9NZN8 540 aaKnown RBP13.17□□□□□ -0.3
HDAC7-228ENST00000548938 CLEC2DQ9UHP7 191 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 FAM227AF5H4B4 570 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 WWP2O00308 870 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 SMAD6O43541 496 aaKnown RBP13.17□□□□□ -0.3
HDAC7-228ENST00000548938 POU1F1P28069 291 aa13.17□□□□□ -0.3
HDAC7-228ENST00000548938 NSG1P42857 185 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms