RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ITGB7P26010 798 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 GTF2E2P29084 291 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 CD96P40200 585 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 GRK6P43250 576 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CCR10P46092 362 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SUOXP51687 545 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ERVK-8P63133 956 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 IL5RAQ01344 420 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ZP2Q05996 745 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 RAPSNQ13702 412 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 QPRTQ15274 297 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TUSC1Q2TAM9 212 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ZIK1Q3SY52 487 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 VPS26BQ4G0F5 336 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CTXN3Q4LDR2 81 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 KLHL12Q53G59 568 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 AADACL4Q5VUY2 407 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ATG9BQ674R7 924 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 FCRLBQ6BAA4 426 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 LAMTOR1Q6IAA8 161 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SLC30A6Q6NXT4 461 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ARSKQ6UWY0 536 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 HSDL2Q6YN16 418 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CLEC20AQ6ZU45 233 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 AMIGO1Q86WK6 493 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TRIM69Q86WT6 500 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 C9orf62Q8N4C0 152 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CPA6Q8N4T0 437 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 DTWD1Q8N5C7 304 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 KREMEN2Q8NCW0 462 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ZNF548Q8NEK5 533 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 OR4M2Q8NGB6 313 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 OR9I1Q8NGQ6 314 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TWIST2Q8WVJ9 160 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 KHSRPQ92945 711 aaKnown RBP eCLIP5.07□□□□□ -1.6
USP28-213ENST00000544967 MYLPFQ96A32 169 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 NTAN1Q96AB6 310 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 RHBDF1Q96CC6 855 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PGAP3Q96FM1 320 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 TMEM209Q96SK2 561 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ZSCAN5AQ9BUG6 496 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 APOL5Q9BWW9 433 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 NT5C1AQ9BXI3 368 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CDCA4Q9BXL8 241 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CCDC90BQ9GZT6 254 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 FOLH1BQ9HBA9 442 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 RANGRFQ9HD47 186 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 EMC7Q9NPA0 242 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SLC2A4RGQ9NR83 387 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ZNF275Q9NSD4 429 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 DCAF13Q9NV06 445 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 LYARQ9NX58 379 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 ASIC5Q9NY37 505 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 GDE1Q9NZC3 331 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 FZD10Q9ULW2 581 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 C19orf53Q9UNZ5 99 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 PRELID3BQ9Y3B1 194 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TNPO3Q9Y5L0 923 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 A0A1W2PRG6 482 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 KRBOX1C9JBD0 128 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ATP6V1G2-DDX39BF2Z307 99 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 E2F3O00716 465 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 FAM20BO75063 409 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TSC22D2O75157 780 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ECI2O75521 394 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SLC22A3O75751 556 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 IFNA7P01567 189 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CYBBP04839 570 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 HEXBP07686 556 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 EPCAMP16422 314 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 FPR1P21462 350 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 PTPN3P26045 913 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 UQCRC1P31930 480 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CA5AP35218 305 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 RECQLP46063 649 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 HOXA1P49639 335 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 POLR2JP52435 117 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 ARHGDIAP52565 204 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CLDN20P56880 219 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SLC26A5P58743 744 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 POU6F2P78424 691 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 SLC7A9P82251 487 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SCAPQ12770 1279 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 ABRQ12979 859 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 COL9A2Q14055 689 aaPredicted RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 AANATQ16613 207 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TIGD6Q17RP2 521 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 MINDY4Q4G0A6 757 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 UNC50Q53HI1 259 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 GPR139Q6DWJ6 353 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 RPUSD3Q6P087 351 aaKnown RBP5.07□□□□□ -1.6
USP28-213ENST00000544967 FAHD1Q6P587 224 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TEX261Q6UWH6 196 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 LAYNQ6UX15 382 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 DLEU7Q6UYE1 221 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 TFAP2EQ6VUC0 442 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 LUZP2Q86TE4 346 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 SLC22A15Q8IZD6 547 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 CLDN22Q8N7P3 220 aa5.07□□□□□ -1.6
USP28-213ENST00000544967 IL17RCQ8NAC3 791 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms