RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SMPDL3AQ92484 453 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 ABTB1Q969K4 478 aaPredicted RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 PPCDCQ96CD2 204 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 GABRG3Q99928 467 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 MS4A8Q9BY19 250 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 RSL24D1Q9UHA3 163 aaKnown RBP13.19□□□□□ -0.3
RTN3-210ENST00000540798 TAC3Q9UHF0 121 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 C3orf18Q9UK00 162 aa13.19□□□□□ -0.3
RTN3-210ENST00000540798 ZNF701M0R085 212 aaPredicted RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 KLK1P06870 262 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 ITGA1P56199 1179 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 KCNJ10P78508 379 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 TEAD4Q15561 434 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 MLF2Q15773 248 aaPredicted RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 IER5LQ5T953 404 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 ZNF852Q6ZMS4 543 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 LPCAT2Q7L5N7 544 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 VTCN1Q7Z7D3 282 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 C8orf59Q8N0T1 100 aaPredicted RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 CIDECQ96AQ7 238 aaPredicted RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 TRMT61BQ9BVS5 477 aaKnown RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 CUEDC1Q9NWM3 386 aaPredicted RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 SLC17A4Q9Y2C5 497 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 WDR37Q9Y2I8 494 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 WBP11Q9Y2W2 641 aaKnown RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 E9PQ18 207 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 PLPP1O14494 284 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 CPNE6O95741 557 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 C6orf47O95873 294 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 PRKACGP22612 351 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 ELK4P28324 431 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 SOX9P48436 509 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 RPS21P63220 83 aaKnown RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 EEF1A2Q05639 463 aaKnown RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 SFSWAPQ12872 951 aaKnown RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 IL18R1Q13478 541 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 ELOAQ14241 798 aaKnown RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 DEPDC1Q5TB30 811 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 KHDRBS2Q5VWX1 349 aaKnown RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 KIAA1161Q6NSJ0 714 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 CCDC80Q76M96 950 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 CEP68Q76N32 757 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 GALNT10Q86SR1 603 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 CACUL1Q86Y37 369 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 LINC01555Q8NAE3 123 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 HDAC2Q92769 488 aaKnown RBP13.18□□□□□ -0.3
RTN3-210ENST00000540798 SLC35B4Q969S0 331 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 TMEM38AQ9H6F2 299 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 PCDHGA8Q9Y5G5 932 aa13.18□□□□□ -0.3
RTN3-210ENST00000540798 SLC35G4P0C7Q5 338 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 CXCR2P25025 360 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 DNAJA1P31689 397 aaKnown RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 BSGP35613 385 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 PPP1R8Q12972 351 aaKnown RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 COX20Q5RI15 118 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 ZNF691Q5VV52 312 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 KDM4DQ6B0I6 523 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 LAIR2Q6ISS4 152 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 KIAA1211LQ6NV74 962 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.17□□□□□ -0.3
RTN3-210ENST00000540798 C2orf73Q8N5S3 287 aaPredicted RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 C11orf65Q8NCR3 313 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 ZNF555Q8NEP9 628 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 INSM2Q96T92 566 aaPredicted RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 BARD1Q99728 777 aaKnown RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 AIF1LQ9BQI0 150 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 EPS8L2Q9H6S3 715 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 PHPT1Q9NRX4 125 aaPredicted RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 CLEC1BQ9P126 229 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 TAAR2Q9P1P5 351 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 PADI2Q9Y2J8 665 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 CFAP20Q9Y6A4 193 aaKnown RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 RFXAPO00287 272 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 E2F6O75461 281 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 CEACAM5P06731 702 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 IL3P08700 152 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 JUNBP17275 347 aaPredicted RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 FPR1P21462 350 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 CCR8P51685 355 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 CLCNKAP51800 687 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 RBBP4Q09028 425 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 FADDQ13158 208 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 CBX3Q13185 183 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 NUMA1Q14980 2115 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 ATAT1Q5SQI0 421 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 ZNF773Q6PK81 442 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 TMEM26Q6ZUK4 368 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 CYP4Z1Q86W10 505 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 ADGRF3Q8IZF5 1079 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 CHDHQ8NE62 594 aaPredicted RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 SCARF2Q96GP6 870 aaPredicted RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 ZNF764Q96H86 408 aaPredicted RBP13.17□□□□□ -0.3
RTN3-210ENST00000540798 MPP4Q96JB8 637 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 SLC35A5Q9BS91 424 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 BTBD1Q9H0C5 482 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 LTB4R2Q9NPC1 389 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 C1GALT1Q9NS00 363 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 TAS2R9Q9NYW1 312 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 AHSPQ9NZD4 102 aa13.17□□□□□ -0.3
RTN3-210ENST00000540798 RANBP2P49792 3224 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms