RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CPXCR1Q8N123 301 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 EIF4E3Q8N5X7 224 aaKnown RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 NIPA2Q8N8Q9 360 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 XXYLT1Q8NBI6 393 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 C11orf65Q8NCR3 313 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 UCN3Q969E3 161 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 CPNE4Q96A23 557 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 CERS2Q96G23 380 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 CPNE1Q99829 537 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 DDX31Q9H8H2 851 aaKnown RBP9.13□□□□□ -0.95
CLIP1-214ENST00000540539 FOLH1BQ9HBA9 442 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 UTS2RQ9UKP6 389 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 NCKAP1Q9Y2A7 1128 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 ORC6Q9Y5N6 252 aa9.13□□□□□ -0.95
CLIP1-214ENST00000540539 FFAR3O14843 346 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 GPR42O15529 346 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 LYRM1O43325 122 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 ICAM1P05362 532 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 NR2C1P13056 603 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 PFKLP17858 780 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 CXCL3P19876 107 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 POU3F2P20265 443 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 HTR1EP28566 365 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 RORAP35398 523 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 VSX2P58304 361 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 CAMK2DQ13557 499 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 EXOC3L2Q2M3D2 409 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 HECTD3Q5T447 861 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 TSTD2Q5T7W7 516 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 PLBD1Q6P4A8 553 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 BLOC1S3Q6QNY0 202 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 SCIMPQ6UWF3 145 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 CYP4Z1Q86W10 505 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 DTWD1Q8N5C7 304 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 KCTD6Q8NC69 237 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 IPMKQ8NFU5 416 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 METTL6Q8TCB7 284 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 STYXQ8WUJ0 223 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 DNASE1L2Q92874 299 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 SLC22A18Q96BI1 424 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 ZNF419Q96HQ0 510 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 MEGF10Q96KG7 1140 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 RHOVQ96L33 236 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 AGAP2Q99490 1192 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 PTPN18Q99952 460 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 CCM2Q9BSQ5 444 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 TRIM62Q9BVG3 475 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 AP5M1Q9H0R1 490 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 MIXL1Q9H2W2 232 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 ABCB9Q9NP78 766 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 SEC14L3Q9UDX4 400 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 DHRS7Q9Y394 339 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 KLK4Q9Y5K2 254 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 TARM1B6A8C7 271 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 GNGT2O14610 69 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 SEC22BO75396 215 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 OR56A5P0C7T3 313 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 IGFBP5P24593 272 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 CTSCP53634 463 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 EEFSECP57772 596 aaKnown RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 KIAA1024LP59773 190 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 CUL2Q13617 745 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 NFYCQ13952 458 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 KEAP1Q14145 624 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 TAF1AQ15573 450 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 DEFB115Q30KQ5 88 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 PRAMEF13Q5VWM6 474 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 ESRP1Q6NXG1 681 aaKnown RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 HAGHLQ6PII5 290 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 C3P1Q6ZMU1 363 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 CBWD2Q8IUF1 395 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 DNAAF3Q8N9W5 541 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 CAMKVQ8NCB2 501 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 LPCAT1Q8NF37 534 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 REPS2Q8NFH8 660 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 COQ8AQ8NI60 647 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 GPR152Q8TDT2 470 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 ZNF606Q8WXB4 792 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 MTERF3Q96E29 417 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 H2AFJQ9BTM1 129 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 RIMS4Q9H426 269 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 SLC28A3Q9HAS3 691 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 ZNF334Q9HCZ1 680 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-214ENST00000540539 KRT84Q9NSB2 600 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 ZMIZ1Q9ULJ6 1067 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 RNF215Q9Y6U7 377 aa9.12□□□□□ -0.95
CLIP1-214ENST00000540539 UBA6A0AVT1 1052 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-214ENST00000540539 PER2O15055 1255 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 TCAPO15273 167 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 PPM1DO15297 605 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 TREHO43280 583 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 LILRB5O75023 590 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 MOCS2O96007 188 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-214ENST00000540539 FOSP01100 380 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-214ENST00000540539 PTHP01270 115 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 HLA-DQB1P01920 261 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 CRYBA1P05813 215 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 PDGFRAP16234 1089 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 TPSB2P20231 275 aa9.11□□□□□ -0.95
CLIP1-214ENST00000540539 DNASE1P24855 282 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms