RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DNASE1L2Q92874 299 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 FAM129BQ96TA1 746 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 CRISPLD2Q9H0B8 497 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 TIMMDC1Q9NPL8 285 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 IMP3Q9NV31 184 aaKnown RBP16.2■□□□□ 0.18
USP28-208ENST00000540438 TUBA8Q9NY65 449 aaPredicted RBP16.2■□□□□ 0.18
USP28-208ENST00000540438 TMEM229AB2RXF0 380 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 PRAMEF10O60809 474 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 NDUFS2O75306 463 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 NTN1O95631 604 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 C8orf89P0DMQ9 161 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 OPRL1P41146 370 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 CD300CQ08708 224 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 MTAPQ13126 283 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 DUSP7Q16829 419 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 SPATS1Q496A3 300 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 SHQ1Q6PI26 577 aaKnown RBP16.2■□□□□ 0.18
USP28-208ENST00000540438 RD3Q7Z3Z2 195 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 REM2Q8IYK8 340 aaPredicted RBP16.2■□□□□ 0.18
USP28-208ENST00000540438 SVOPLQ8N434 492 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 OR56A3Q8NH54 315 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 C16orf78Q8WTQ4 265 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 CHTF18Q8WVB6 975 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 HDAC2Q92769 488 aaKnown RBP16.2■□□□□ 0.18
USP28-208ENST00000540438 TAMM41Q96BW9 452 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 SLAMF7Q9NQ25 335 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 WDFY3Q8IZQ1 3526 aa16.2■□□□□ 0.18
USP28-208ENST00000540438 GRXCR2A6NFK2 248 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 KLHL18O94889 574 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 HNRNPCP07910 306 aaKnown RBP eCLIP16.19■□□□□ 0.18
USP28-208ENST00000540438 GJA8P48165 433 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 C21orf59P57076 290 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 EXOC3L2Q2M3D2 409 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 TMEM240Q5SV17 173 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 EGFLAMQ63HQ2 1017 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 TANGO2Q6ICL3 276 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 PRR23BQ6ZRT6 265 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 VPS37AQ8NEZ2 397 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 OR9A1PQ8NGU1 263 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 TFGQ92734 400 aaPredicted RBP16.19■□□□□ 0.18
USP28-208ENST00000540438 FGF13Q92913 245 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 RAD9AQ99638 391 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 KLHL25Q9H0H3 589 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 ASIC5Q9NY37 505 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 CA5BQ9Y2D0 317 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 WDR37Q9Y2I8 494 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 MTCL1Q9Y4B5 1905 aaKnown RBP16.19■□□□□ 0.18
USP28-208ENST00000540438 TRIM64CA6NLI5 447 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 TNFRSF11BO00300 401 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 MID1O15344 667 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 SP140Q13342 867 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 CAMK2GQ13555 558 aaPredicted RBP16.19■□□□□ 0.18
USP28-208ENST00000540438 C2orf27AQ580R0 203 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 SLC16A12Q6ZSM3 486 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 SERPINA11Q86U17 422 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 CELF5Q8N6W0 485 aaKnown RBP16.19■□□□□ 0.18
USP28-208ENST00000540438 FAR1Q8WVX9 515 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 SLC5A11Q8WWX8 675 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 ZDHHC5Q9C0B5 715 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 DMRT3Q9NQL9 472 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 IRAK4Q9NWZ3 460 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 PRKAG2Q9UGJ0 569 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 TMED5Q9Y3A6 229 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 PCDHGA10Q9Y5H3 936 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 HEATR5BQ9P2D3 2071 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 LOC100506127A0A0U1RQW1 187 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 H0YIV9 168 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 SNRNP200O75643 2136 aaKnown RBP16.19■□□□□ 0.18
USP28-208ENST00000540438 SEC14L2O76054 403 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 C1GALT1C1LP0DN25 315 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 HPCAL1P37235 193 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 P2RY2P41231 377 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 PTPN5P54829 565 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 SCARB2Q14108 478 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 NR1D2Q14995 579 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 ADPRMQ3LIE5 342 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 PAGE2BQ5JRK9 111 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 VN1R5Q7Z5H4 357 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 FRMD1Q8N878 549 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 PJA1Q8NG27 643 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 OR5D16Q8NGK9 328 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 RORBQ92753 470 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 FCRL4Q96PJ5 515 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 KXD1Q9BQD3 176 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 CCDC177Q9NQR7 707 aaPredicted RBP16.19■□□□□ 0.18
USP28-208ENST00000540438 GPR83Q9NYM4 423 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 NDUFAF4Q9P032 175 aa16.19■□□□□ 0.18
USP28-208ENST00000540438 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.18■□□□□ 0.18
USP28-208ENST00000540438 A0A1W2PP55 124 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 TRIM64A6NGJ6 449 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 FUCA1P04066 466 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 DNAJA1P31689 397 aaKnown RBP16.18■□□□□ 0.18
USP28-208ENST00000540438 PNLIPRP1P54315 467 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 ZNF763Q0D2J5 394 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 NPRL3Q12980 569 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 CSTF3Q12996 717 aaKnown RBP16.18■□□□□ 0.18
USP28-208ENST00000540438 GTF2IRD2BQ6EKJ0 949 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 TMIGD1Q6UXZ0 262 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 CBLL1Q75N03 491 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 SLCO6A1Q86UG4 719 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms