RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 EZRP15311 586 aaKnown RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 ATP6V1B1P15313 513 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 TCF4P15884 667 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 GOT1P17174 413 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 PSMB4P28070 264 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 PTENP60484 403 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 RPP38P78345 283 aaKnown RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 ASIC1P78348 528 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SLC34A1Q06495 639 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SLC3A1Q07837 685 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 LCP2Q13094 533 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 CDH18Q13634 790 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 TMEM132DQ14C87 1099 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ZNF239Q16600 458 aaKnown RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 MEP1BQ16820 701 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ZNF674Q2M3X9 581 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SNAI3Q3KNW1 292 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 C2orf76Q3KRA6 126 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 LBHQ53QV2 105 aaPredicted RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 GLRA4Q5JXX5 417 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ATP1A1-AS1Q5TC04 95 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 CES4AQ5XG92 561 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 FAM166AQ6J272 317 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ALKBH5Q6P6C2 394 aaKnown RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 IYDQ6PHW0 289 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 FRRS1Q6ZNA5 592 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 LINC00696Q6ZRV3 163 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 RFPL4BQ6ZWI9 263 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 GPR141Q7Z602 305 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 CDC20BQ86Y33 519 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ERC1Q8IUD2 1116 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 CCDC83Q8IWF9 413 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 AMER3Q8N944 861 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SMYD1Q8NB12 490 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 UXS1Q8NBZ7 420 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 APOBEC4Q8WW27 367 aaKnown RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 ULK4Q96C45 1275 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 OMA1Q96E52 524 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SGF29Q96ES7 293 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ZNF274Q96GC6 653 aaPredicted RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 SLC45A3Q96JT2 553 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 AGAP4Q96P64 663 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ATG101Q9BSB4 218 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 ALKBH7Q9BT30 221 aaPredicted RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 TDRD1Q9BXT4 1180 aaKnown RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 FUT8Q9BYC5 575 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 TRIM6Q9C030 488 aaPredicted RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 HOXD1Q9GZZ0 328 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SHARPINQ9H0F6 387 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 RSPH9Q9H1X1 276 aaPredicted RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 PNNQ9H307 717 aaKnown RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 UBQLN3Q9H347 655 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SRD5A3Q9H8P0 318 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 LMAN1LQ9HAT1 526 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 GPN1Q9HCN4 374 aaPredicted RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 RAB9BQ9NP90 201 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 SLCO1C1Q9NYB5 712 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 NOCTQ9UK39 431 aaKnown RBP2.35□□□□□ -2.03
CD44-238ENST00000534296 FBXW2Q9UKT8 454 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 STX8Q9UNK0 236 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 PLCL2Q9UPR0 1127 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 WIPI2Q9Y4P8 454 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 CSAG2Q9Y5P2 127 aa2.35□□□□□ -2.03
CD44-238ENST00000534296 A0A087WUV0 522 aaPredicted RBP2.34□□□□□ -2.03
CD44-238ENST00000534296 IGKV6D-41A0A0C4DH26 115 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 A0A1W2PPK0 400 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 A0A1W2PR80 420 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 MPTX1A8MV57 137 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 CACNB4O00305 520 aaPredicted RBP2.34□□□□□ -2.03
CD44-238ENST00000534296 SOCS3O14543 225 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 SURF4O15260 269 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 ST8SIA3O43173 380 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 SLC7A4O43246 635 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 SELENOFO60613 162 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 CLN5O75503 358 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 LETM1O95202 739 aaPredicted RBP2.34□□□□□ -2.03
CD44-238ENST00000534296 ANKRD34CP0C6C1 535 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 THEGLP0DJG4 465 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 GP1BBP13224 206 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 F3P13726 295 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 CD27P26842 260 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 GIFP27352 417 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 RBMS1P29558 406 aaKnown RBP2.34□□□□□ -2.03
CD44-238ENST00000534296 ALDH1B1P30837 517 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 ATP6V1E1P36543 226 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 CAPGP40121 348 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 FRKP42685 505 aaPredicted RBP2.34□□□□□ -2.03
CD44-238ENST00000534296 KCNJ1P48048 391 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 KCNK10P57789 538 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 ABCE1P61221 599 aaKnown RBP2.34□□□□□ -2.03
CD44-238ENST00000534296 CALCOCO2Q13137 446 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 NFATC2Q13469 925 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 GCKRQ14397 625 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 TAB1Q15750 504 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 TYSND1Q2T9J0 566 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 GPR33Q49SQ1 333 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 XKR3Q5GH77 459 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 DDI2Q5TDH0 399 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 LCLAT1Q6UWP7 414 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 LEKR1Q6ZMV7 388 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms