RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 EEF1DP29692 281 aaKnown RBP12.25□□□□□ -0.45
VPS28-216ENST00000533806 HNF4AP41235 474 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 XCR1P46094 333 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 SLCO1A2P46721 670 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 PIK3CGP48736 1102 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 STXBP1P61764 594 aaKnown RBP12.25□□□□□ -0.45
VPS28-216ENST00000533806 RHAGQ02094 409 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 Q0VFX4 171 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 RBBP7Q16576 425 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 TOR1AIP1Q5JTV8 583 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 MED27Q6P2C8 311 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 ABHD17CQ6PCB6 329 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 MREGQ8N565 214 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 FDCSPQ8NFU4 85 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 OR2L5Q8NG80 312 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 OR2W6PQ8NHA6 318 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 EPS8L3Q8TE67 593 aaKnown RBP12.25□□□□□ -0.45
VPS28-216ENST00000533806 UBE2E3Q969T4 207 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 GAL3ST3Q96A11 431 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 C8orf44Q96CB5 159 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 SCYL1Q96KG9 808 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 NSUN5Q96P11 429 aaKnown RBP12.25□□□□□ -0.45
VPS28-216ENST00000533806 OR1F2PQ96R84 312 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 SMAD5Q99717 465 aaKnown RBP12.25□□□□□ -0.45
VPS28-216ENST00000533806 NTMT1Q9BV86 223 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 YIPF2Q9BWQ6 316 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 ATP13A2Q9NQ11 1180 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 MKL2Q9ULH7 1088 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 TP53TG5Q9Y2B4 290 aa12.25□□□□□ -0.45
VPS28-216ENST00000533806 HELZ2Q9BYK8 2649 aaKnown RBP12.24□□□□□ -0.45
VPS28-216ENST00000533806 IGHV1-45A0A0A0MS14 117 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 A0A1B0GTL3 188 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 DLX3O60479 287 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 SMIM24O75264 130 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 CDH16O75309 829 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 COX6A1P12074 109 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 NR1D1P20393 614 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 SERPINB1P30740 379 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 PIK3CBP42338 1070 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 C19orf57Q0VDD7 668 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 AIMP2Q13155 320 aaKnown RBP12.24□□□□□ -0.45
VPS28-216ENST00000533806 RUNX2Q13950 521 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 HIST2H2ACQ16777 129 aaPredicted RBP12.24□□□□□ -0.45
VPS28-216ENST00000533806 TUBB8Q3ZCM7 444 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 HIST2H2AA3Q6FI13 130 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 GALNT16Q8N428 558 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 CLEC1AQ8NC01 280 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 PLPP5Q8NEB5 264 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 OR52B6Q8NGF0 335 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 WDR20Q8TBZ3 569 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 ZNF483Q8TF39 744 aaPredicted RBP12.24□□□□□ -0.45
VPS28-216ENST00000533806 PEX11GQ96HA9 241 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 F2RL3Q96RI0 385 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 SLC25A23Q9BV35 468 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 NUDT9Q9BW91 350 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 MS4A8Q9BY19 250 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 REXO4Q9GZR2 422 aaKnown RBP12.24□□□□□ -0.45
VPS28-216ENST00000533806 ZNF700Q9H0M5 742 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 ZNF552Q9H707 407 aaPredicted RBP12.24□□□□□ -0.45
VPS28-216ENST00000533806 NOL11Q9H8H0 719 aaKnown RBP12.24□□□□□ -0.45
VPS28-216ENST00000533806 PRDM7Q9NQW5 492 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 ZNF71Q9NQZ8 489 aaPredicted RBP12.24□□□□□ -0.45
VPS28-216ENST00000533806 PSD3Q9NYI0 1048 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 CCDC88CQ9P219 2028 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 DCDC2Q9UHG0 476 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 RNF11Q9Y3C5 154 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 PCDHGB7Q9Y5F8 929 aa12.24□□□□□ -0.45
VPS28-216ENST00000533806 GCN1Q92616 2671 aaKnown RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 EIF4E1BA6NMX2 242 aaKnown RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 G3V2L1 256 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 PPP6CO00743 305 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 ERI3O43414 337 aaKnown RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 SUV39H1O43463 412 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 ALOX12BO75342 701 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 SCELO95171 688 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 HPP00738 406 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 HEXBP07686 556 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 FHP07954 510 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 ACPPP15309 386 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 HPDP32754 393 aaPredicted RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 SKP1P63208 163 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 OLR1P78380 273 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 BTN3A2P78410 334 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 SLC18A2Q05940 514 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 NFATC3Q12968 1075 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 TRAF3Q13114 568 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 MYBPC3Q14896 1274 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 PCOLCEQ15113 449 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 TMEM35AQ53FP2 167 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 LACTB2Q53H82 288 aaPredicted RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 DEPDC1Q5TB30 811 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 ASB18Q6ZVZ8 466 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 RPS27LQ71UM5 84 aaKnown RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 NDUFAF7Q7L592 441 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 CA13Q8N1Q1 262 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 HUS1BQ8NHY5 278 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 TBC1D20Q96BZ9 403 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 IMMP1LQ96LU5 166 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 WDR77Q9BQA1 342 aaPredicted RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 TMEM109Q9BVC6 243 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms