RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 QRFPRQ96P65 431 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 FRG2BQ96QU4 278 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 MECRQ9BV79 373 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 SLC29A3Q9BZD2 475 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 GPN2Q9H9Y4 310 aaPredicted RBP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 DMRT3Q9NQL9 472 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 ACSS2Q9NR19 701 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 FARSAQ9Y285 508 aaKnown RBP13.72□□□□□ -0.21
CPSF1-206ENST00000531480 MAP4K5Q9Y4K4 846 aa13.72□□□□□ -0.21
CPSF1-206ENST00000531480 A0A0A6YYC8 382 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-206ENST00000531480 SERTM1A2A2V5 107 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 C9J4A7 227 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 I3L1I5 382 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-206ENST00000531480 K7ENP7 123 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 NPHS1O60500 1241 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 OR4F21O95013 312 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 SCELO95171 688 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 ZNF888P0CJ79 500 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-206ENST00000531480 IL1RNP18510 177 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 TSPAN8P19075 237 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 SERPINB5P36952 375 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 OR1D4P47884 311 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 CUL3Q13618 768 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 RBBP7Q16576 425 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 NKG7Q16617 165 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 TMEM35AQ53FP2 167 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 TTMPQ5BVD1 217 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 DEPDC1Q5TB30 811 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 ABHD17CQ6PCB6 329 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 INO80CQ6PI98 192 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-206ENST00000531480 GPRIN3Q6ZVF9 776 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 UBE3DQ7Z6J8 389 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 CCNYL1Q8N7R7 359 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 ENDOVQ8N8Q3 282 aaKnown RBP13.71□□□□□ -0.21
CPSF1-206ENST00000531480 OR9A4Q8NGU2 314 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 ZBTB9Q96C00 473 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 CMTM7Q96FZ5 175 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 SPSB2Q99619 263 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 REXO4Q9GZR2 422 aaKnown RBP13.71□□□□□ -0.21
CPSF1-206ENST00000531480 ANKHQ9HCJ1 492 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 KCNK9Q9NPC2 374 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 PRDM7Q9NQW5 492 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 IFT80Q9P2H3 777 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-206ENST00000531480 NDOR1Q9UHB4 597 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 TCFL5Q9UL49 500 aa13.71□□□□□ -0.21
CPSF1-206ENST00000531480 TMEM120BA0PK00 339 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 MAGEB17A8MXT2 336 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 CREG1O75629 220 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 KLHL18O94889 574 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 FBLP22087 321 aaKnown RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 TSFMP43897 325 aaKnown RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 AVPR1BP47901 424 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 WDR4P57081 412 aaKnown RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 RPS15P62841 145 aaKnown RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 SKP1P63208 163 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 TOR1AIP1Q5JTV8 583 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 BROXQ5VW32 411 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 KHDRBS2Q5VWX1 349 aaKnown RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 RNF165Q6ZSG1 346 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 MYLK4Q86YV6 388 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 SRFBP1Q8NEF9 429 aaKnown RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 OR2Y1Q8NGV0 311 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 ZCCHC10Q8TBK6 192 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 ADAMTS17Q8TE56 1095 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 NACC2Q96BF6 587 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 MMABQ96EY8 250 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 MTERF1Q99551 399 aaKnown RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 ZNF717Q9BY31 904 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 ACTL8Q9H568 366 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 BRF2Q9HAW0 419 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 MKKSQ9NPJ1 570 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 CTSFQ9UBX1 484 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 ZNF282Q9UDV7 671 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 NXT1Q9UKK6 140 aaKnown RBP13.7□□□□□ -0.22
CPSF1-206ENST00000531480 SNX6Q9UNH7 406 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 NAALAD2Q9Y3Q0 740 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 MAU2Q9Y6X3 613 aa13.7□□□□□ -0.22
CPSF1-206ENST00000531480 ERI3O43414 337 aaKnown RBP13.69□□□□□ -0.22
CPSF1-206ENST00000531480 SEMA3DO95025 777 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 SERPIND1P05546 499 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 CYC1P08574 325 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 FGF4P08620 206 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 PCNAP12004 261 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 HSD3B1P14060 373 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 IL10P22301 178 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 PTX3P26022 381 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-206ENST00000531480 HSD3B2P26439 372 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 ARRB2P32121 409 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 CCR10P46092 362 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 NEK2P51955 445 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 TMPRSS3P57727 454 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 PHEXP78562 749 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 COL9A2Q14055 689 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-206ENST00000531480 RCN2Q14257 317 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 DEFB134Q4QY38 66 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 CFAP157Q5JU67 520 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 ARHGAP40Q5TG30 622 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 CES4AQ5XG92 561 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 CCDC81Q6ZN84 652 aa13.69□□□□□ -0.22
CPSF1-206ENST00000531480 ATG14Q6ZNE5 492 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms