RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TEX9Q8N6V9 391 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 CCDC63Q8NA47 563 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 TTLQ8NG68 377 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 FKBP10Q96AY3 582 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 PHF21BQ96EK2 531 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 PTCD3Q96EY7 689 aaKnown RBP9.62□□□□□ -0.87
VPS28-204ENST00000526054 APOPT1Q96IL0 206 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 SMC6Q96SB8 1091 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 ZNF552Q9H707 407 aaPredicted RBP9.62□□□□□ -0.87
VPS28-204ENST00000526054 VIPAS39Q9H9C1 493 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 MKS1Q9NXB0 559 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 ERRFI1Q9UJM3 462 aaPredicted RBP9.62□□□□□ -0.87
VPS28-204ENST00000526054 GRID1Q9ULK0 1009 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 RUVBL1Q9Y265 456 aaKnown RBP9.62□□□□□ -0.87
VPS28-204ENST00000526054 ASB1Q9Y576 335 aa9.62□□□□□ -0.87
VPS28-204ENST00000526054 ITPR2Q14571 2701 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 ANKUB1A6NFN9 424 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 GOLGA6L10A6NI86 522 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 FOXO6A8MYZ6 492 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 AGPSO00116 658 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 E2F3O00716 465 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 PRPF4O43172 522 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS28-204ENST00000526054 SIX3O95343 332 aaPredicted RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 RPS17P08708 135 aaKnown RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 SBK3P0C264 359 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 MYL2P10916 166 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 PIM1P11309 404 aaPredicted RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 ALAS2P22557 587 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 ATP5F1P24539 256 aaPredicted RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 ITGA3P26006 1051 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 GSTM2P28161 218 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 AHRP35869 848 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 ARL1P40616 181 aaPredicted RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 GCGRP47871 477 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 RGS1Q08116 209 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 AIMP2Q13155 320 aaKnown RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 RBBP5Q15291 538 aaKnown RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 TBCCQ15814 346 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 HKDC1Q2TB90 917 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 IRAK1BP1Q5VVH5 260 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 PRMT9Q6P2P2 845 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 TMIGD1Q6UXZ0 262 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 TTLL10Q6ZVT0 673 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 MAMDC2Q7Z304 686 aaPredicted RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 GOLGA7Q7Z5G4 137 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 VN1R4Q7Z5H5 301 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 RDH11Q8TC12 318 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 PPP4R1Q8TF05 950 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 SLC13A3Q8WWT9 602 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 UBE2E3Q969T4 207 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 CCDC126Q96EE4 140 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 WDR34Q96EX3 536 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 MVB12AQ96EY5 273 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 SEC16BQ96JE7 1060 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 C5orf34Q96MH7 638 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 STMN4Q9H169 189 aaPredicted RBP9.61□□□□□ -0.87
VPS28-204ENST00000526054 SPNS1Q9H2V7 528 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 CENPHQ9H3R5 247 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 NT5DC2Q9H857 520 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 PRM3Q9NNZ6 103 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 ATP13A2Q9NQ11 1180 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 ZNF446Q9NWS9 450 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 ZFP69BQ9UJL9 534 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 FBXL4Q9UKA2 621 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 SLC5A6Q9Y289 635 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 PCDHGA10Q9Y5H3 936 aa9.61□□□□□ -0.87
VPS28-204ENST00000526054 DOPEY1Q5JWR5 2465 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 URADA6NGE7 173 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 LRRC14BA6NHZ5 514 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 P2RX6O15547 441 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 NDUFS4O43181 175 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 LCMT2O60294 686 aaKnown RBP9.6□□□□□ -0.87
VPS28-204ENST00000526054 DLX3O60479 287 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 PLIN3O60664 434 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 UGDHO60701 494 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ALOX12BO75342 701 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 CBX6O95503 412 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 LDLRP01130 860 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 PROCP04070 461 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 SERPIND1P05546 499 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 EPORP19235 508 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ITGAXP20702 1163 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 MMP11P24347 488 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 HPDP32754 393 aaPredicted RBP9.6□□□□□ -0.87
VPS28-204ENST00000526054 HNF4AP41235 474 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 CASP2P42575 452 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 CCNG1P51959 295 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 PRKAA2P54646 552 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 SOX8P57073 446 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 HERVK_113P63132 956 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 SKP1P63208 163 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 PCDH1Q08174 1060 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 PWP1Q13610 501 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 DOC2AQ14183 400 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 GRHL2Q6ISB3 625 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 ZYG11AQ6WRX3 759 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 Q6ZS92 163 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 CUZD1Q86UP6 607 aa9.6□□□□□ -0.87
VPS28-204ENST00000526054 MYLK4Q86YV6 388 aaPredicted RBP9.6□□□□□ -0.87
VPS28-204ENST00000526054 TMEM151BQ8IW70 566 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms