RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 LGI2Q8N0V4 545 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 SPAG16Q8N0X2 631 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 Q8N377 158 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 KLHDC1Q8N7A1 406 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 AMER3Q8N944 861 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 Q8NBF4 154 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 AQP11Q8NBQ7 271 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 ATP6V1E2Q96A05 226 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 DTNBP1Q96EV8 351 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 LINC00615Q96LM1 132 aaPredicted RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 C4orf45Q96LM5 186 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 FAM218AQ96MZ4 157 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 MTMR9Q96QG7 549 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 SEPHS2Q99611 448 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 PI4K2AQ9BTU6 479 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 CCDC106Q9BWC9 280 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 TEX13BQ9BXU2 312 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 MTMR12Q9C0I1 747 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 NSRP1Q9H0G5 558 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 NOL11Q9H8H0 719 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 CNOT10Q9H9A5 744 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 HPS4Q9NQG7 708 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 DDX18Q9NVP1 670 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 DUSP12Q9UNI6 340 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 PPIEQ9UNP9 301 aaKnown RBP3.32□□□□□ -1.88
CD44-217ENST00000525348 CSAG2Q9Y5P2 127 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 SCAPERQ9BY12 1400 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 SIGLEC1Q9BZZ2 1709 aa3.32□□□□□ -1.88
CD44-217ENST00000525348 AGRNO00468 2067 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 MYH14Q7Z406 1995 aaKnown RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 KIAA1107Q9UPP5 1409 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 ROCK1Q13464 1354 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CARMIL1Q5VZK9 1371 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 MYO3BQ8WXR4 1341 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 SYNJ2BP-COX16A0A087WUM0 186 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 hCG_1809904A0A1W2PP81 198 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 A0A1W2PPE2 198 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 A0A1W2PPR1 153 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 A0A1W2PR64 198 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CLRN2A0PK11 232 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 OR5K4A6NMS3 321 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 H0Y626 953 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CCL24O00175 119 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 STX6O43752 255 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 ACSL4O60488 711 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 PSMD10O75832 226 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 TGDSO95455 350 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 GUCA1CO95843 209 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 PENKP01210 267 aaPredicted RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 GP1BBP13224 206 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 P4HA1P13674 534 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 ACADSP16219 412 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CD22P20273 847 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 PRKACGP22612 351 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 DNAJB1P25685 340 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CDC25CP30307 473 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 RPL9P32969 192 aaKnown RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 FNTAP49354 379 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 LIG4P49917 911 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 ETV1P50549 477 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 XGP55808 180 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 SLC8A3P57103 927 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CCNA1P78396 465 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 IFI35P80217 286 aaPredicted RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 NCBP1Q09161 790 aaKnown RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 CBX3Q13185 183 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 SGCGQ13326 291 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 VEZF1Q14119 521 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 EFTUD2Q15029 972 aaKnown RBP eCLIP3.31□□□□□ -1.88
CD44-217ENST00000525348 MAJINQ3KP22 176 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 FUT11Q495W5 492 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 GPR33Q49SQ1 333 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 LRRC23Q53EV4 343 aaPredicted RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 TMEM53Q6P2H8 277 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 NEK5Q6P3R8 708 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 NKAIN4Q8IVV8 208 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CCDC83Q8IWF9 413 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 TC2NQ8N9U0 490 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 TSPAN14Q8NG11 270 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 NEK11Q8NG66 645 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 OR52K2Q8NGK3 314 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 OR6S1Q8NH40 331 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CCDC110Q8TBZ0 833 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 MAPK15Q8TD08 544 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 FAM71F1Q96KD3 344 aaPredicted RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 ALS2CR12Q96Q35 445 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 CGREF1Q99674 301 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 GPATCH1Q9BRR8 931 aaKnown RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 SLC24A2Q9UI40 661 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 ANAPC2Q9UJX6 822 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 GMEB1Q9Y692 573 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 BZW2Q9Y6E2 419 aaKnown RBP3.31□□□□□ -1.88
CD44-217ENST00000525348 R4GN57 208 aa3.31□□□□□ -1.88
CD44-217ENST00000525348 KIAA0586Q9BVV6 1533 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ABCC11Q96J66 1382 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 MAP3K19Q56UN5 1328 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 A0A087WUV0 522 aaPredicted RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 TRBV5-5A0A0J9YX44 114 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 PI4K2BG5E9Z4 385 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 NDC80O14777 642 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms