RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NUDT8Q8WV74 236 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 RPL3LQ92901 407 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 RAB8BQ92930 207 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PDLIM5Q96HC4 596 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 EGLN2Q96KS0 407 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FRMD6Q96NE9 622 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 TSSK6Q9BXA6 273 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC12A9Q9BXP2 914 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 TAS2R9Q9NYW1 312 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FBXW2Q9UKT8 454 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PRSS21Q9Y6M0 314 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PDE4DIPQ5VU43 2346 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 DLGAP1O14490 977 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 TNFRSF10BO14763 440 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SCAMP2O15127 329 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 JRKO75564 520 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 MMP2P08253 660 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF10P21506 573 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 HOXD9P28356 352 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 LMAN2Q12907 356 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 XKR7Q5GH72 579 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF648Q5T619 568 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 IDNKQ5T6J7 187 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 NADSYN1Q6IA69 706 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 KIAA1161Q6NSJ0 714 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SUSD1Q6UWL2 747 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM20CQ8IXL6 584 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 GJD3Q8N144 294 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 TMEM151AQ8N4L1 468 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC9A6Q92581 669 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 KAT2AQ92830 837 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 RBM38Q9H0Z9 239 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 MAT2BQ9NZL9 334 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 P2RX2Q9UBL9 471 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 ACSL6Q9UKU0 697 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 CDH7Q9ULB5 785 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 MGAT4BQ9UQ53 548 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PCDHGB6Q9Y5F9 930 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM92AA1XBS5 289 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 AGAP5A6NIR3 686 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 CPNE3O75131 537 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 C8AP07357 584 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 HSD3B1P14060 373 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 KELP23276 732 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 HSD3B2P26439 372 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 STAT5AP42229 794 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PGFP49763 221 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 KHKP50053 298 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 HNRNPA0Q13151 305 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 IRF5Q13568 498 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 LIPKQ5VXJ0 399 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 CPZQ66K79 652 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 TMIGD1Q6UXZ0 262 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 MARCH9Q86YJ5 346 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 NAGSQ8N159 534 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 C17orf50Q8WW18 174 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC5A11Q8WWX8 675 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FATE1Q969F0 183 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 RNF208Q9H0X6 261 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 KCNN2Q9H2S1 579 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 ERVW-1Q9UQF0 538 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PHIPQ8WWQ0 1821 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 ARHGEF33A8MVX0 844 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 TSPAN6O43657 245 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 OR5F1O95221 314 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 OXSR1O95747 527 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 C21orf33P30042 268 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SUOXP51687 545 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 NCBP2P52298 156 aaKnown RBP eCLIP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SMSP52788 366 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FBXW4P57775 412 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 FADDQ13158 208 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 SF1Q15637 639 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 DLEU7Q6UYE1 221 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 DPY19L3Q6ZPD9 716 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 PGBD3Q8N328 593 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 RHOXF1Q8NHV9 184 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 CYB5D2Q8WUJ1 264 aa8.1□□□□□ -1.11
LIMCH1-216ENST00000512820 CA12O43570 354 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 BMP4P12644 408 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 HK3P52790 923 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 PRR5P85299 388 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 CAP1Q01518 475 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 CSTF1Q05048 431 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 RGNQ15493 299 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 SPHARQ15513 63 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 DESI1Q6ICB0 168 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 NUDT13Q86X67 352 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF366Q8N895 744 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ASCC1Q8N9N2 400 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 DENND6BQ8NEG7 585 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 HUS1BQ8NHY5 278 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 TP53INP1Q96A56 240 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 CPPED1Q9BRF8 314 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 OR51E2Q9H255 320 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 RDH14Q9HBH5 336 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 GJD2Q9UKL4 321 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 PRAMEF33A0A0G2JMD5 474 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 PRAMEF10O60809 474 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 SAGP10523 405 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms