RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KLHL18O94889 574 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 CHEK2O96017 543 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 KLK3P07288 261 aaPredicted RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 FGF4P08620 206 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 PTX3P26022 381 aaPredicted RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 PCBP4P57723 403 aaKnown RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 CSTF3Q12996 717 aaKnown RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 SLC9A5Q14940 896 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 DEPDC1Q5TB30 811 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 PRMT9Q6P2P2 845 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 CLYBLQ8N0X4 340 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 FAM76AQ8TAV0 307 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 ZDHHC19Q8WVZ1 309 aaPredicted RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 MR1Q95460 341 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 MMABQ96EY8 250 aaPredicted RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 SERPINI1Q99574 410 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 CENPKQ9BS16 269 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 ACPTQ9BZG2 426 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 ILKAPQ9H0C8 392 aaPredicted RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 AKIRIN1Q9H9L7 192 aaPredicted RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 DKK4Q9UBT3 224 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 SLC12A4Q9UP95 1085 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 DNAJC15Q9Y5T4 150 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 ZFHX4Q86UP3 3567 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 ZNF860A6NHJ4 632 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 NSA2O95478 260 aaKnown RBP28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 LIPCP11150 499 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 HSD3B1P14060 373 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 HSD3B2P26439 372 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 OR1D4P47884 311 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 RAP1GDS1P52306 607 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 DCDP81605 110 aaKnown RBP28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 OCRLQ01968 901 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 CUL3Q13618 768 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 NKAIN1Q4KMZ8 207 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 TWIST2Q8WVJ9 160 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 CKAP2Q8WWK9 683 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 KCNC2Q96PR1 638 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 DPH2Q9BQC3 489 aaPredicted RBP28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 LHX9Q9NQ69 397 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 PSD3Q9NYI0 1048 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 HAO1Q9UJM8 370 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 PTGDR2Q9Y5Y4 395 aa28.1■■■□□ 2.09
LIMCH1-211ENST00000509638 GALR3O60755 368 aaPredicted RBP28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 SMIM10L1P0DMW3 83 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 AVPR1BP47901 424 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 ZNF33BQ06732 778 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 TGM3Q08188 693 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 ARHGAP40Q5TG30 622 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 LCN10Q6JVE6 187 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 ABHD17CQ6PCB6 329 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 DTX1Q86Y01 620 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 FGF11Q92914 225 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 SMIM10Q96HG1 83 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 FAR2Q96K12 515 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 CDC14AQ9UNH5 594 aa28.09■■■□□ 2.09
LIMCH1-211ENST00000509638 SGK494L7N484 410 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 PLPP1O14494 284 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 RDH16O75452 317 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 CCNYL3P0C7X3 344 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 AGXTP21549 392 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 SKP1P63208 163 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 DSG2Q14126 1118 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 UGT3A2Q3SY77 523 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 FAM199XQ6PEV8 388 aaPredicted RBP28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 UNQ6494/PRO21346Q6UXR6 183 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 ZNF517Q6ZMY9 492 aaPredicted RBP28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 UBE3DQ7Z6J8 389 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 CACNA2D3Q8IZS8 1091 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 GBP7Q8N8V2 638 aaPredicted RBP28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 SRFBP1Q8NEF9 429 aaKnown RBP28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 CHST8Q9H2A9 424 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 ZNF304Q9HCX3 659 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 PADI1Q9ULC6 663 aa28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 EPB41L3Q9Y2J2 1087 aaPredicted RBP28.08■■■□□ 2.09
LIMCH1-211ENST00000509638 C1QTNF9BB2RNN3 333 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 RTCAO00442 366 aaKnown RBP28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 TLX3O43711 291 aaPredicted RBP28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 SKAP2O75563 359 aaPredicted RBP28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 SEMA3DO95025 777 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 C1QTNF9P0C862 333 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 FBLP22087 321 aaKnown RBP28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 STAT5AP42229 794 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 SSR2P43308 183 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 BTN3A2P78410 334 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 HMGCS1Q01581 520 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 TGIF1Q15583 401 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 FAM198BQ6UWH4 519 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 AMER3Q8N944 861 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 COL26A1Q96A83 441 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 RGMAQ96B86 450 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 MAGEB18Q96M61 343 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 MRPL1Q9BYD6 325 aaKnown RBP28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 TUBB1Q9H4B7 451 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 COPS7BQ9H9Q2 264 aaPredicted RBP28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 SLC22A11Q9NSA0 550 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 A0A088AWK7 358 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 H0YIG0 161 aa28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 ZNF10P21506 573 aaPredicted RBP28.07■■■□□ 2.08
LIMCH1-211ENST00000509638 RPL14P50914 215 aaKnown RBP28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms