RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 HDAC3O15379 428 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 RDH16O75452 317 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 RSL1D1O76021 490 aaKnown RBP12.89□□□□□ -0.35
CPNE1-227ENST00000498056 STK17BO94768 372 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 KLHL18O94889 574 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 SEMA3DO95025 777 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 NTRK1P04629 796 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 TROVE2P10155 538 aaKnown RBP eCLIP12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ZNF28P17035 718 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ALOX12P18054 663 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ZNF10P21506 573 aaPredicted RBP12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ALAS2P22557 587 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 PTX3P26022 381 aaPredicted RBP12.89□□□□□ -0.35
CPNE1-227ENST00000498056 CERS1P27544 350 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 AVPR1BP47901 424 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ARSFP54793 590 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 SKP1P63208 163 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ACSM2AQ08AH3 577 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 SF3A3Q12874 501 aaKnown RBP eCLIP12.89□□□□□ -0.355e-46■■□□□ 12.9
CPNE1-227ENST00000498056 CUL3Q13618 768 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 HERC3Q15034 1050 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 FAM214AQ32MH5 1076 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ADPRMQ3LIE5 342 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 UGT3A2Q3SY77 523 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 TMEM35AQ53FP2 167 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ARHGAP40Q5TG30 622 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 VWA5B1Q5TIE3 1220 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 YOD1Q5VVQ6 348 aaPredicted RBP12.89□□□□□ -0.35
CPNE1-227ENST00000498056 GARNL3Q5VVW2 1013 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ACSM2BQ68CK6 577 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 RNF165Q6ZSG1 346 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 NUDT13Q86X67 352 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 HOMEZQ8IX15 550 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 C1orf52Q8N6N3 182 aaKnown RBP12.89□□□□□ -0.35
CPNE1-227ENST00000498056 OR9A4Q8NGU2 314 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 RGMAQ96B86 450 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 CHMP6Q96FZ7 201 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 KCNC2Q96PR1 638 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ZPBPQ9BS86 351 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 EBPLQ9BY08 206 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 ASPSCR1Q9BZE9 553 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 NSRP1Q9H0G5 558 aaKnown RBP12.89□□□□□ -0.35
CPNE1-227ENST00000498056 NMRK1Q9NWW6 199 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 VTI1BQ9UEU0 232 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 PPT2Q9UMR5 302 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 NAALAD2Q9Y3Q0 740 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 AK5Q9Y6K8 562 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 MAU2Q9Y6X3 613 aa12.89□□□□□ -0.35
CPNE1-227ENST00000498056 TEX51A0A1B0GUA7 166 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 ARHGAP10A1A4S6 786 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 BRINP1O60477 761 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 DIAPH2O60879 1101 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 HBQ1P09105 142 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 FBLP22087 321 aaKnown RBP12.88□□□□□ -0.35
CPNE1-227ENST00000498056 OLR1P78380 273 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 BTN3A2P78410 334 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 ATP6AP1LQ52LC2 224 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 SPIN4Q56A73 249 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 MANEAQ5SRI9 462 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 DEPDC1Q5TB30 811 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 RHBDD2Q6NTF9 364 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 MAVSQ7Z434 540 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 COMMD6Q7Z4G1 85 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 TRIM46Q7Z4K8 759 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 PDSS2Q86YH6 399 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 ARHGEF39Q8N4T4 335 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 GALNT6Q8NCL4 622 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 SRFBP1Q8NEF9 429 aaKnown RBP12.88□□□□□ -0.35
CPNE1-227ENST00000498056 CDC26Q8NHZ8 85 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 PROKR1Q8TCW9 393 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 MMABQ96EY8 250 aaPredicted RBP12.88□□□□□ -0.35
CPNE1-227ENST00000498056 C3orf30Q96M34 536 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 TRIM55Q9BYV6 548 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 MEAF6Q9HAF1 191 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 LRTM1Q9HBL6 345 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 HCN3Q9P1Z3 774 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 POLR3HQ9Y535 204 aaPredicted RBP12.88□□□□□ -0.35
CPNE1-227ENST00000498056 PCDHGA3Q9Y5H0 932 aa12.88□□□□□ -0.35
CPNE1-227ENST00000498056 A0A0G2JND7 137 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 SERTM1A2A2V5 107 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 SGK494L7N484 410 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 SDHDO14521 159 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 LSM1O15116 133 aaKnown RBP12.87□□□□□ -0.35
CPNE1-227ENST00000498056 B3GALT2O43825 422 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 PCDH7O60245 1069 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 GALR3O60755 368 aaPredicted RBP12.87□□□□□ -0.35
CPNE1-227ENST00000498056 PEX11AO75192 247 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 NSA2O95478 260 aaKnown RBP12.87□□□□□ -0.35
CPNE1-227ENST00000498056 GBAP04062 536 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 EPHA3P29320 983 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 TIA1P31483 386 aaKnown RBP eCLIP12.87□□□□□ -0.35
CPNE1-227ENST00000498056 SLC5A2P31639 672 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 GCGRP47871 477 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 SEC24CP53992 1094 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 EMP3P54852 163 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 AQP5P55064 265 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 AP5B1Q2VPB7 878 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 NXNQ6DKJ4 435 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 ABHD17CQ6PCB6 329 aa12.87□□□□□ -0.35
CPNE1-227ENST00000498056 ZNF793Q6ZN11 406 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms