RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 NCOA7Q8NI08 942 aa2.91□□□□□ -1.94
VPS50-219ENST00000495039 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.91□□□□□ -1.94
VPS50-219ENST00000495039 BSCL2Q96G97 398 aaPredicted RBP2.91□□□□□ -1.94
VPS50-219ENST00000495039 LGMNQ99538 433 aa2.91□□□□□ -1.94
VPS50-219ENST00000495039 TDRD1Q9BXT4 1180 aaKnown RBP2.91□□□□□ -1.94
VPS50-219ENST00000495039 SLITRK2Q9H156 845 aa2.91□□□□□ -1.94
VPS50-219ENST00000495039 TUBB1Q9H4B7 451 aa2.91□□□□□ -1.94
VPS50-219ENST00000495039 MINDY3Q9H8M7 445 aa2.91□□□□□ -1.94
VPS50-219ENST00000495039 PHPT1Q9NRX4 125 aaPredicted RBP2.91□□□□□ -1.94
VPS50-219ENST00000495039 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.91□□□□□ -1.94
VPS50-219ENST00000495039 TBC1D13Q9NVG8 400 aa2.91□□□□□ -1.94
VPS50-219ENST00000495039 HACD3Q9P035 362 aa2.91□□□□□ -1.94
VPS50-219ENST00000495039 NPHP3Q7Z494 1330 aa2.91□□□□□ -1.94
VPS50-219ENST00000495039 SHISA9B4DS77 424 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 PRSS46E5RG02 174 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 SLC1A7O00341 560 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 IFIT3O14879 490 aaKnown RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 TFECO14948 347 aaPredicted RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 CYTIPO60759 359 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 MOCS2O96007 188 aaPredicted RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 CASTP20810 708 aaKnown RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 SSTR1P30872 391 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 DUTP33316 252 aaKnown RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 MTF1Q14872 753 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 PRR30Q53SZ7 412 aaPredicted RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 MPP7Q5T2T1 576 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 RSBN1Q5VWQ0 802 aaPredicted RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 OR4C11Q6IEV9 310 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 PRSS55Q6UWB4 352 aaPredicted RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 BTNL8Q6UX41 500 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 GDPGP1Q6ZNW5 385 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 MSANTD1Q6ZTZ1 278 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 PRUNE1Q86TP1 453 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 CATSPERDQ86XM0 798 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 OR8H3Q8N146 312 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 OR4D10Q8NGI6 311 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 C11orf45Q8TAV5 145 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 DNASE1L2Q92874 299 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 RIT1Q92963 219 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 NXPE2Q96DL1 559 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 RBM41Q96IZ5 413 aaKnown RBP2.9□□□□□ -1.95
VPS50-219ENST00000495039 C2orf48Q96LS8 159 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 CCDC114Q96M63 670 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 ADPGKQ9BRR6 497 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 PI4K2AQ9BTU6 479 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 LCE3DQ9BYE3 92 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 C10orf88Q9H8K7 445 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 ZWILCHQ9H900 591 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 LMAN1LQ9HAT1 526 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 B3GAT2Q9NPZ5 323 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 GMEB2Q9UKD1 530 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 GTF3C4Q9UKN8 822 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 AGTPBP1Q9UPW5 1226 aa2.9□□□□□ -1.95
VPS50-219ENST00000495039 MTMR11A4FU01 709 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 SRRM4A7MD48 611 aaKnown RBP2.89□□□□□ -1.95
VPS50-219ENST00000495039 A8MVM7 634 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 NPIPA3F8WFD2 350 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 RLN1P04808 185 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 ANKRD34CP0C6C1 535 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 CD59P13987 128 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 TIA1P31483 386 aaKnown RBP eCLIP2.89□□□□□ -1.95
VPS50-219ENST00000495039 ETV5P41161 510 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 CLDN17P56750 224 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 PTK6Q13882 451 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 DUSP5Q16690 384 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 FAM46CQ5VWP2 391 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 CES4AQ5XG92 561 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 CASC4Q6P4E1 433 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 SPATA31D1Q6ZQQ2 1576 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 CDHR3Q6ZTQ4 885 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 GPR141Q7Z602 305 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 KRT77Q7Z794 578 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 ZFAND4Q86XD8 727 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 GOT1L1Q8NHS2 421 aaPredicted RBP2.89□□□□□ -1.95
VPS50-219ENST00000495039 NACAP1Q9BZK3 213 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 HOXD1Q9GZZ0 328 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 MTHFD2LQ9H903 347 aaPredicted RBP2.89□□□□□ -1.95
VPS50-219ENST00000495039 RPF1Q9H9Y2 349 aaKnown RBP2.89□□□□□ -1.95
VPS50-219ENST00000495039 GRPEL1Q9HAV7 217 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 SH3GLB2Q9NR46 395 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 PDRG1Q9NUG6 133 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 VPS18Q9P253 973 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 FBXL4Q9UKA2 621 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 ITGA11Q9UKX5 1188 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 COLEC10Q9Y6Z7 277 aa2.89□□□□□ -1.95
VPS50-219ENST00000495039 A0A1W2PRQ8 180 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 TMEM129A0AVI4 362 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 SHISA7A6NL88 538 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 YDJCA8MPS7 323 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 H3BMM5 538 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 PSMA7O14818 248 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 KIF5CO60282 957 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 SELENOFO60613 162 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 GALR3O60755 368 aaPredicted RBP2.88□□□□□ -1.95
VPS50-219ENST00000495039 SAP30O75446 220 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 CEACAM4O75871 244 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 SLU7O95391 586 aaKnown RBP2.88□□□□□ -1.95
VPS50-219ENST00000495039 POP4O95707 220 aaKnown RBP2.88□□□□□ -1.95
VPS50-219ENST00000495039 SP9P0CG40 484 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 NPBWR1P48145 328 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms