RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 UBE2UQ5VVX9 321 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 LIPIQ6XZB0 460 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 COMMD6Q7Z4G1 85 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 TRIM73Q86UV7 250 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 GGHQ92820 318 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 METTL2AQ96IZ6 378 aaKnown RBP17.23■□□□□ 0.35
VIM-206ENST00000487938 FAM210AQ96ND0 272 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 ITPAQ9BY32 194 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 SPASTQ9UBP0 616 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 WNT6Q9Y6F9 365 aa17.23■□□□□ 0.35
VIM-206ENST00000487938 PCM1Q15154 2024 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 M0R082 166 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 M0R129 80 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 QSOX1O00391 747 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 ZNF197O14709 1029 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 ATP6V1G1O75348 118 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 TNFRSF21O75509 655 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 ZNF763Q0D2J5 394 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 SCARB2Q14108 478 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 PRSS53Q2L4Q9 553 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 MPEG1Q2M385 716 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 UTP15Q8TED0 518 aaKnown RBP17.22■□□□□ 0.35
VIM-206ENST00000487938 PHF10Q8WUB8 498 aaKnown RBP17.22■□□□□ 0.35
VIM-206ENST00000487938 SLC38A4Q969I6 547 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 BHLHE41Q9C0J9 482 aaPredicted RBP17.22■□□□□ 0.35
VIM-206ENST00000487938 SPNS1Q9H2V7 528 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 POLE4Q9NR33 117 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 TDP1Q9NUW8 608 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 TMEM39AQ9NV64 488 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 PSORS1C1Q9UIG5 152 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 MRPS14O60783 128 aaKnown RBP17.22■□□□□ 0.35
VIM-206ENST00000487938 NNMTP40261 264 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 METAP1P53582 386 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 MAPK11Q15759 364 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 IFI44LQ53G44 452 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 ZNF805Q5CZA5 627 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 RNF130Q86XS8 419 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 OR9Q2Q8NGE9 314 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 FAM83CQ9BQN1 747 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 DCSTAMPQ9H295 470 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 GPR83Q9NYM4 423 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 ATP6V1HQ9UI12 483 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 OSGIN1Q9UJX0 560 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 TBX21Q9UL17 535 aa17.22■□□□□ 0.35
VIM-206ENST00000487938 PLXNA2O75051 1894 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 CLDN24A6NM45 220 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 ADAMDEC1O15204 470 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 AIREO43918 545 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 KLK1P06870 262 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 ACRP10323 421 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 GRK3P35626 688 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 RXRGP48443 463 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 TAS2R50P59544 299 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 FADDQ13158 208 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 GCNT6Q5T4J0 391 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 DPPA4Q7L190 304 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 KLHDC8AQ8IYD2 350 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 LGI4Q8N135 537 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 C2orf73Q8N5S3 287 aaPredicted RBP17.21■□□□□ 0.35
VIM-206ENST00000487938 RHOXF1Q8NHV9 184 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 MCFD2Q8NI22 146 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.21■□□□□ 0.35
VIM-206ENST00000487938 C16orf78Q8WTQ4 265 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 SLC6A14Q9UN76 642 aa17.21■□□□□ 0.35
VIM-206ENST00000487938 ABHD14A-ACY1A0A1B0GW23 586 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 PCDH17O14917 1159 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 KLHL18O94889 574 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 STSP08842 583 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 GADD45AP24522 165 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 CHI3L1P36222 383 aaPredicted RBP17.21■□□□□ 0.34
VIM-206ENST00000487938 WDR5P61964 334 aaKnown RBP17.21■□□□□ 0.34
VIM-206ENST00000487938 CSNK2BP67870 215 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 PCDH1Q08174 1060 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 ELP6Q0PNE2 266 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 TIGD6Q17RP2 521 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 MMP21Q8N119 569 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 DNAJC22Q8N4W6 341 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 ZNF740Q8NDX6 193 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 OR4C15Q8NGM1 316 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 PPCDCQ96CD2 204 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 VPS35Q96QK1 796 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 SORBS1Q9BX66 1292 aaKnown RBP17.21■□□□□ 0.34
VIM-206ENST00000487938 ZNF226Q9NYT6 803 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 MAPRE3Q9UPY8 281 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 DYRK1BQ9Y463 629 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 PCDHGA2Q9Y5H1 932 aa17.21■□□□□ 0.34
VIM-206ENST00000487938 K7ESM1 405 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 MOSPD3O75425 235 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 FURINP09958 794 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 C1GALT1C1LP0DN25 315 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 TPP2P29144 1249 aaPredicted RBP17.2■□□□□ 0.34
VIM-206ENST00000487938 GANABQ14697 944 aaKnown RBP17.2■□□□□ 0.34
VIM-206ENST00000487938 SLC5A12Q1EHB4 618 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 MICAQ29983 383 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 LINC00299Q6ZSB3 139 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.2■□□□□ 0.34
VIM-206ENST00000487938 OR52N2Q8NGI0 321 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 OR2AG1Q9H205 316 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 DSN1Q9H410 356 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 DMRT3Q9NQL9 472 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms