RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 ALAS2P22557 587 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 CBX3Q13185 183 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 KCNC3Q14003 757 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 INAQ16352 499 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 CARTPTQ16568 116 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 EGFLAMQ63HQ2 1017 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 TMEM102Q8N9M5 508 aaPredicted RBP12.72□□□□□ -0.37
HMGN1-216ENST00000486741 WDR48Q8TAF3 677 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 DNASE1L2Q92874 299 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 TSACCQ96A04 125 aaPredicted RBP12.72□□□□□ -0.37
HMGN1-216ENST00000486741 SFXN1Q9H9B4 322 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 ARMC1Q9NVT9 282 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 TAS2R9Q9NYW1 312 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 ATP6V1HQ9UI12 483 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 PCDHB11Q9Y5F2 797 aa12.72□□□□□ -0.37
HMGN1-216ENST00000486741 LINC01553A4QN01 128 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 EFCAB10A6NFE3 127 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 KPNA4O00629 521 aaPredicted RBP12.71□□□□□ -0.37
HMGN1-216ENST00000486741 TSPAN12O95859 305 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 NUDT7P0C024 238 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 CDKN2CP42773 168 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 GJA8P48165 433 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 CCR3P51677 355 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 DEFA1P59665 94 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 DEFA3P59666 94 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 SPANXN2Q5MJ10 180 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 TANGO2Q6ICL3 276 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 P2RY8Q86VZ1 359 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 OXR1Q8N573 874 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 SRFBP1Q8NEF9 429 aaKnown RBP12.71□□□□□ -0.37
HMGN1-216ENST00000486741 MCFD2Q8NI22 146 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 TP53INP1Q96A56 240 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 DTD2Q96FN9 168 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 DPH7Q9BTV6 452 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 PREBQ9HCU5 417 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 RBMX2Q9Y388 322 aaKnown RBP12.71□□□□□ -0.37
HMGN1-216ENST00000486741 IFNGR2P38484 337 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 CSNK1DP48730 415 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 SEPHS1P49903 392 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 MXD1Q05195 221 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 EIF4HQ15056 248 aaKnown RBP12.71□□□□□ -0.37
HMGN1-216ENST00000486741 TOR1AIP1Q5JTV8 583 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 POLR2J3Q9H1A7 115 aaKnown RBP12.71□□□□□ -0.37
HMGN1-216ENST00000486741 MARCH7Q9H992 704 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 RDH14Q9HBH5 336 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 KLHL1Q9NR64 748 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 MAFFQ9ULX9 164 aa12.71□□□□□ -0.37
HMGN1-216ENST00000486741 GABRR3A8MPY1 467 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 IL12RB1P42701 662 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 CLDN2P57739 230 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 SMARCD3Q6STE5 483 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 ZNF761Q86XN6 746 aaPredicted RBP12.71□□□□□ -0.38
HMGN1-216ENST00000486741 ZNF655Q8N720 491 aaPredicted RBP12.71□□□□□ -0.38
HMGN1-216ENST00000486741 TEFMQ96QE5 360 aaKnown RBP12.71□□□□□ -0.38
HMGN1-216ENST00000486741 CCNB1IP1Q9NPC3 277 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 AGPAT4Q9NRZ5 378 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 SARDHQ9UL12 918 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 PCDHA9Q9Y5H5 950 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 A0A1B0GTW7 788 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 BMP10O95393 424 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 SMIM11AP58511 58 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 HYAL2Q12891 473 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 ADNP2Q6IQ32 1131 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 POMZP3Q6PJE2 187 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 RNF44Q7L0R7 432 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 FAM86B1Q8N7N1 296 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 AQP11Q8NBQ7 271 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 OR8K5Q8NH50 307 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 TEX47Q8TBZ9 253 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 ARRDC3Q96B67 414 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 PRRG3Q9BZD7 231 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 KCNK12Q9HB15 430 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 EBF1Q9UH73 591 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 IRAK3Q9Y616 596 aa12.71□□□□□ -0.38
HMGN1-216ENST00000486741 RLFQ13129 1914 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 IMPDH2P12268 514 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 MAP2K4P45985 399 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 METAP1P53582 386 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 PRR5P85299 388 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 STX4Q12846 297 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 GPR68Q15743 365 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 DPPA4Q7L190 304 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 AMER2Q8N7J2 671 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 ZNF583Q96ND8 569 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 RBCK1Q9BYM8 510 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 TM7SF3Q9NS93 570 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 CA5BQ9Y2D0 317 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 B4DGG1 531 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.7□□□□□ -0.38
HMGN1-216ENST00000486741 PSMD11O00231 422 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 SCAMP2O15127 329 aaKnown RBP12.7□□□□□ -0.38
HMGN1-216ENST00000486741 MED26O95402 600 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 C9P02748 559 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 OR12D1P0DN82 309 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 CSNK2A2P19784 350 aaPredicted RBP12.7□□□□□ -0.38
HMGN1-216ENST00000486741 ITGB8P26012 769 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 GRIA2P42262 883 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 STXBP1P61764 594 aaKnown RBP12.7□□□□□ -0.38
HMGN1-216ENST00000486741 MTAPQ13126 283 aa12.7□□□□□ -0.38
HMGN1-216ENST00000486741 RAB39AQ14964 217 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms