RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 DHRS7Q9Y394 339 aa11.77□□□□□ -0.53
SKA3-206ENST00000475251 SCN3AQ9NY46 2000 aa11.77□□□□□ -0.53
SKA3-206ENST00000475251 TCRBV16S1A1N1A0A5B0 115 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 TMEM200CA6NKL6 621 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 LCMT2O60294 686 aaKnown RBP11.76□□□□□ -0.53
SKA3-206ENST00000475251 CEP104O60308 925 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 PDE9AO76083 593 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 C8GP07360 202 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 HIST1H2AGP0C0S8 130 aaPredicted RBP11.76□□□□□ -0.53
SKA3-206ENST00000475251 ZSCAN5DPP0CG00 497 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 HIST1H2ADP20671 130 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 DNASE1P24855 282 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 ACVR2AP27037 513 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 ZFP36L2P47974 494 aaKnown RBP11.76□□□□□ -0.53
SKA3-206ENST00000475251 CCR8P51685 355 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 NUP107P57740 925 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 SP140Q13342 867 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 THOC5Q13769 683 aaKnown RBP11.76□□□□□ -0.53
SKA3-206ENST00000475251 TERF2Q15554 542 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 CCNG2Q16589 344 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 SKOR2Q2VWA4 1001 aaPredicted RBP11.76□□□□□ -0.53
SKA3-206ENST00000475251 DEFB134Q4QY38 66 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 UGT3A1Q6NUS8 523 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 CASC4Q6P4E1 433 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 DRICH1Q6PGQ1 229 aaPredicted RBP11.76□□□□□ -0.53
SKA3-206ENST00000475251 AGTRAPQ6RW13 159 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 CYHR1Q6ZMK1 362 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 GSTA5Q7RTV2 222 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 STRA8Q7Z7C7 330 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 LMNTD2Q8IXW0 634 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 B3GNT7Q8NFL0 401 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 OR52N2Q8NGI0 321 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 GIMAP7Q8NHV1 300 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 NRGNQ92686 78 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 RMND5BQ96G75 393 aaPredicted RBP11.76□□□□□ -0.53
SKA3-206ENST00000475251 HIST1H2AHQ96KK5 128 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 SLC30A3Q99726 388 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 HIST1H2AJQ99878 128 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 CCDC77Q9BR77 488 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 H2AFJQ9BTM1 129 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 SARGQ9BW04 601 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 ST6GALNAC2Q9UJ37 374 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 ERVK-11Q9UQG0 969 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 HRH3Q9Y5N1 445 aa11.76□□□□□ -0.53
SKA3-206ENST00000475251 INTS1Q8N201 2190 aaKnown RBP11.76□□□□□ -0.53
SKA3-206ENST00000475251 TRBV11-1A0A0K0K1C0 115 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 TRBC2A0A5B9 178 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 MAGEB16A2A368 324 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 OR1F1O43749 312 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 ITGA10O75578 1167 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 CTAG2O75638 210 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 CDH1P12830 882 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 RGS4P49798 205 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 SSR4P51571 173 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 GPR85P60893 370 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 PPIAP62937 165 aaKnown RBP11.75□□□□□ -0.53
SKA3-206ENST00000475251 LSM11P83369 360 aaKnown RBP eCLIP11.75□□□□□ -0.53
SKA3-206ENST00000475251 PLGLB1Q02325 96 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 NAE1Q13564 534 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 DHX34Q14147 1143 aaKnown RBP11.75□□□□□ -0.53
SKA3-206ENST00000475251 GXYLT1Q4G148 440 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 RAD9BQ6WBX8 426 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 B3GNT6Q6ZMB0 384 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 CAMKMTQ7Z624 323 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 SLC22A16Q86VW1 577 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 CPNE9Q8IYJ1 553 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 NFAM1Q8NET5 270 aaPredicted RBP11.75□□□□□ -0.53
SKA3-206ENST00000475251 ABHD11Q8NFV4 315 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 NT5CQ8TCD5 201 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 CD200R1Q8TD46 325 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 CALML6Q8TD86 181 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 ALKBH8Q96BT7 664 aaKnown RBP11.75□□□□□ -0.53
SKA3-206ENST00000475251 VMP1Q96GC9 406 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 ALPK1Q96QP1 1244 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 GPR21Q99679 349 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 SGPP1Q9BX95 441 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 PARVBQ9HBI1 364 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 FBXW2Q9UKT8 454 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 ZKSCAN5Q9Y2L8 839 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 YARS2Q9Y2Z4 477 aaKnown RBP11.75□□□□□ -0.53
SKA3-206ENST00000475251 PHF3Q92576 2039 aaKnown RBP11.75□□□□□ -0.53
SKA3-206ENST00000475251 ABCA2Q9BZC7 2435 aa11.75□□□□□ -0.53
SKA3-206ENST00000475251 IGKV3D-11A0A0A0MRZ8 115 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 SYNDIG1LA6NDD5 238 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 A8MVJ9 347 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 NPIPA2E9PIF3 369 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 NPIPA3F8WFD2 350 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 SLC16A5O15375 505 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 AVILO75366 819 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 SERPIND1P05546 499 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 ZNF888P0CJ79 500 aaPredicted RBP11.74□□□□□ -0.53
SKA3-206ENST00000475251 RNH1P13489 461 aaKnown RBP11.74□□□□□ -0.53
SKA3-206ENST00000475251 OLR1P78380 273 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 FOXD4Q12950 439 aaPredicted RBP11.74□□□□□ -0.53
SKA3-206ENST00000475251 CEBPEQ15744 281 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 SLC25A35Q3KQZ1 300 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 BBS9Q3SYG4 887 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 EMC4Q5J8M3 183 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 NDUFAF5Q5TEU4 345 aa11.74□□□□□ -0.53
SKA3-206ENST00000475251 ARSKQ6UWY0 536 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms