RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 NR4A3Q92570 626 aa17.44■□□□□ 0.38
COL7A1-209ENST00000474432 C5orf34Q96MH7 638 aa17.44■□□□□ 0.38
COL7A1-209ENST00000474432 CPNE1Q99829 537 aa17.44■□□□□ 0.38
COL7A1-209ENST00000474432 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.44■□□□□ 0.38
COL7A1-209ENST00000474432 CLK4Q9HAZ1 481 aaKnown RBP17.44■□□□□ 0.38
COL7A1-209ENST00000474432 NCF1BA6NI72 391 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-209ENST00000474432 NCF1CA8MVU1 366 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-209ENST00000474432 PRAMEF2O60811 474 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 B4GALT2O60909 372 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 FAM155BO75949 473 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 STSP08842 583 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 NCF1P14598 390 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-209ENST00000474432 GNAZP19086 355 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 EPORP19235 508 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 COL8A1P27658 744 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 HNRNPH1P31943 449 aaKnown RBP17.43■□□□□ 0.38
COL7A1-209ENST00000474432 GP5P40197 560 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 OR4D2P58180 307 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 GUCY2DQ02846 1103 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ILF2Q12905 390 aaKnown RBP17.43■□□□□ 0.38
COL7A1-209ENST00000474432 DLG1Q12959 904 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 TOR1AIP1Q5JTV8 583 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ADNP2Q6IQ32 1131 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 NIPAL1Q6NVV3 410 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 SYT10Q6XYQ8 523 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 QSOX2Q6ZRP7 698 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ZNF572Q7Z3I7 529 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-209ENST00000474432 CA13Q8N1Q1 262 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 MDS2Q8NDY4 140 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ELP5Q8TE02 316 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ESAMQ96AP7 390 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ZNF354BQ96LW1 612 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 MAGEB10Q96LZ2 347 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-209ENST00000474432 SIGLEC12Q96PQ1 595 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 LPAR4Q99677 370 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 PHACTR1Q9C0D0 580 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 KCNK13Q9HB14 408 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 NECTIN3Q9NQS3 549 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ZNF490Q9ULM2 529 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ASB1Q9Y576 335 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 CLDN16Q9Y5I7 305 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 ITPR2Q14571 2701 aa17.43■□□□□ 0.38
COL7A1-209ENST00000474432 LRRTM2O43300 516 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 GSTA2P09210 222 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 CD22P20273 847 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 MAOAP21397 527 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 CASQ1P31415 396 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 CD96P40200 585 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 PLTPP55058 493 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 TUBA3CQ13748 450 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 RUNX2Q13950 521 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 SLBPQ14493 270 aaKnown RBP eCLIP17.42■□□□□ 0.38
COL7A1-209ENST00000474432 KBTBD12Q3ZCT8 623 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 TUBA3EQ6PEY2 450 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 FRA10AC1Q70Z53 315 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 MAMDC2Q7Z304 686 aaPredicted RBP17.42■□□□□ 0.38
COL7A1-209ENST00000474432 KIF2BQ8N4N8 673 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 NFAM1Q8NET5 270 aaPredicted RBP17.42■□□□□ 0.38
COL7A1-209ENST00000474432 MS4A6EQ96DS6 147 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 PTCHD1Q96NR3 888 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 QRFPRQ96P65 431 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 NT5DC2Q9H857 520 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 ABI3Q9P2A4 366 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 TEKT2Q9UIF3 430 aa17.42■□□□□ 0.38
COL7A1-209ENST00000474432 PTBP2Q9UKA9 531 aaKnown RBP17.42■□□□□ 0.38
COL7A1-209ENST00000474432 MYO7BQ6PIF6 2116 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 TCRBV16S1A1N1A0A5B0 115 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 LRIT2A6NDA9 550 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 UQCRHP07919 91 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 STMN1P16949 149 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 JAK1P23458 1154 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 HSPA7P48741 367 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 SLC12A2P55011 1212 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 KCNK10P57789 538 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 PMP22Q01453 160 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 ACTN3Q08043 901 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-209ENST00000474432 ADPRMQ3LIE5 342 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 CDKL4Q5MAI5 379 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 TMIGD1Q6UXZ0 262 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 GPSM1Q86YR5 675 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 PDPRQ8NCN5 879 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 CDKL2Q92772 493 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 KIAA1191Q96A73 305 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 WDR34Q96EX3 536 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 TSPAN17Q96FV3 270 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 HES7Q9BYE0 225 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 GPRC5BQ9NZH0 403 aa17.41■□□□□ 0.38
COL7A1-209ENST00000474432 CACNA1DQ01668 2161 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 A0A0G2JN53 185 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 URADA6NGE7 173 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 TGFBR3LH3BV60 316 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 PRMT3O60678 531 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 RASAL1O95294 804 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 SLC35E2BP0CK96 405 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 RNH1P13489 461 aaKnown RBP17.4■□□□□ 0.38
COL7A1-209ENST00000474432 MAGEA4P43358 317 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 HNRNPFP52597 415 aaKnown RBP17.4■□□□□ 0.38
COL7A1-209ENST00000474432 RAB10P61026 200 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 ATP6V0D1P61421 351 aa17.4■□□□□ 0.38
COL7A1-209ENST00000474432 SKP1P63208 163 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms