RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PIM1P11309 404 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-205ENST00000465238 EPORP19235 508 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 CASP2P42575 452 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 SOX8P57073 446 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 TBCCQ15814 346 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 IGFL3Q6UXB1 125 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 GOLGA7Q7Z5G4 137 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 PPP1R32Q7Z5V6 425 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 BANPQ8N9N5 519 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 TRPV3Q8NET8 790 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 TTLQ8NG68 377 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 PPP4R1Q8TF05 950 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 SSC4DQ8WTU2 575 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 UBE2E3Q969T4 207 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 ATP6V1E2Q96A05 226 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 FKBP10Q96AY3 582 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 CCDC126Q96EE4 140 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 APOPT1Q96IL0 206 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 ACTR8Q9H981 624 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 PRM3Q9NNZ6 103 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 MAP10Q9P2G4 905 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 EMCNQ9ULC0 261 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 CDC14AQ9UNH5 594 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 B3GNT3Q9Y2A9 372 aa16.8■□□□□ 0.28
COL7A1-205ENST00000465238 TCP11X1B4DZS4 312 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 NDUFS4O43181 175 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 PLIN3O60664 434 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 PRAMEF4O60810 478 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 WFS1O76024 890 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 ONECUT2O95948 504 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 UMODP07911 640 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 ARL1P40616 181 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-205ENST00000465238 RGS1Q08116 209 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 PCDH1Q08174 1060 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 PWP1Q13610 501 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 PRAMEF9Q5VWM5 478 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 MYLK4Q86YV6 388 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-205ENST00000465238 RDH11Q8TC12 318 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 TM9SF4Q92544 642 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 MACROD1Q9BQ69 325 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 ZNF552Q9H707 407 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-205ENST00000465238 NOL11Q9H8H0 719 aaKnown RBP16.79■□□□□ 0.28
COL7A1-205ENST00000465238 WDR54Q9H977 334 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 ATP13A2Q9NQ11 1180 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 SLC22A11Q9NSA0 550 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 MKS1Q9NXB0 559 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 MID2Q9UJV3 735 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 PCTPQ9UKL6 214 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 NOTCH2Q04721 2471 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 NBPF19A0A087WUL8 3843 aa16.79■□□□□ 0.28
COL7A1-205ENST00000465238 ANKDD1BA6NHY2 528 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 AGPSO00116 658 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 SPAG7O75391 227 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 ALBP02768 609 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 MYZAPP0CAP1 466 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 CPA3P15088 417 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 IMPDH1P20839 514 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 GSTM2P28161 218 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 HNF4AP41235 474 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 PRKAA2P54646 552 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 HERVK_113P63132 956 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 CASP8Q14790 479 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 PLEKHN1Q494U1 663 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-205ENST00000465238 LIPJQ5W064 366 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 PRMT9Q6P2P2 845 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 ZYG11AQ6WRX3 759 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 OVCH1Q7RTY7 1134 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 METTL27Q8N6F8 245 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-205ENST00000465238 ANKRD53Q8N9V6 530 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 NT5CQ8TCD5 201 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 CCT6BQ92526 530 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 ZBTB9Q96C00 473 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 MOCOSQ96EN8 888 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 MVB12AQ96EY5 273 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 C10orf90Q96M02 699 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 C1QTNF3Q9BXJ4 246 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 ERVK-6Q9BXR3 956 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 C12orf65Q9H3J6 166 aaKnown RBP16.78■□□□□ 0.28
COL7A1-205ENST00000465238 ZNF304Q9HCX3 659 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 COPG2Q9UBF2 871 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 PLEKHB1Q9UF11 243 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-205ENST00000465238 ZNF490Q9ULM2 529 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-205ENST00000465238 PLLPQ9Y342 182 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 SCN3AQ9NY46 2000 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 DOPEY1Q5JWR5 2465 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 CNTRLQ7Z7A1 2325 aa16.78■□□□□ 0.28
COL7A1-205ENST00000465238 DOCK10Q96BY6 2186 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 URADA6NGE7 173 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 GOLGA6L10A6NI86 522 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 G3V2L1 256 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 PRPF4O43172 522 aaKnown RBP eCLIP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 UGDHO60701 494 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 SEMA7AO75326 666 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 SUPT7LO94864 414 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 MED26O95402 600 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 RPS17P08708 135 aaKnown RBP16.77■□□□□ 0.28
COL7A1-205ENST00000465238 CD22P20273 847 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 ITGAXP20702 1163 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 MMP11P24347 488 aa16.77■□□□□ 0.28
COL7A1-205ENST00000465238 OR1D4P47884 311 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms