RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 CHI3L2Q15782 390 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 GARNL3Q5VVW2 1013 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 CPZQ66K79 652 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 FAM20CQ8IXL6 584 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 SRFBP1Q8NEF9 429 aaKnown RBP16.6■□□□□ 0.25
CPSF4-209ENST00000465132 FAM76AQ8TAV0 307 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 ZNF501Q96CX3 271 aaPredicted RBP16.6■□□□□ 0.25
CPSF4-209ENST00000465132 PPM1MQ96MI6 270 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 MECRQ9BV79 373 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 GSTO2Q9H4Y5 243 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 ELOVL6Q9H5J4 265 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 ENAMQ9NRM1 1142 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 FARSAQ9Y285 508 aaKnown RBP16.6■□□□□ 0.25
CPSF4-209ENST00000465132 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.6■□□□□ 0.25
CPSF4-209ENST00000465132 KLHL20Q9Y2M5 609 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 ASB1Q9Y576 335 aa16.6■□□□□ 0.25
CPSF4-209ENST00000465132 A0A088AWK7 358 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 LRRC14BA6NHZ5 514 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 TTLL8A6PVC2 850 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 OR7A17O14581 309 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 KLF11O14901 512 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 CLEC3AO75596 197 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 CHN1P15882 459 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 ZNF10P21506 573 aaPredicted RBP16.59■□□□□ 0.25
CPSF4-209ENST00000465132 VARSP26640 1264 aaKnown RBP16.59■□□□□ 0.25
CPSF4-209ENST00000465132 PIK3CBP42338 1070 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 SCTRP47872 440 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 PGDP52209 483 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 STXBP1P61764 594 aaKnown RBP16.59■□□□□ 0.25
CPSF4-209ENST00000465132 CHAF1BQ13112 559 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 ZIC1Q15915 447 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 FBXO42Q6P3S6 717 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 ZNF517Q6ZMY9 492 aaPredicted RBP16.59■□□□□ 0.25
CPSF4-209ENST00000465132 ASPGQ86U10 573 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 TMEM126BQ8IUX1 230 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 LAS2Q8IYD9 372 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 SLC38A9Q8NBW4 561 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 OR4F6Q8NGB9 312 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 METTL6Q8TCB7 284 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 LRRC8CQ8TDW0 803 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 SLC13A3Q8WWT9 602 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 CCT6BQ92526 530 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 MR1Q95460 341 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 OR2A5Q96R48 311 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 CCT7Q99832 543 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 NDC1Q9BTX1 674 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 SLC25A23Q9BV35 468 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 RHBGQ9H310 441 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 MANSC1Q9H8J5 431 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 ZBTB26Q9HCK0 441 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 MLXIPLQ9NP71 852 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 PSD3Q9NYI0 1048 aa16.59■□□□□ 0.25
CPSF4-209ENST00000465132 PCDHGA9Q9Y5G4 932 aaKnown RBP16.59■□□□□ 0.25
CPSF4-209ENST00000465132 USP9YO00507 2555 aaPredicted RBP16.58■□□□□ 0.25
CPSF4-209ENST00000465132 ARGFXA6NJG6 315 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 CTSVO60911 334 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 VPS4BO75351 444 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 ULK1O75385 1050 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 EPORP19235 508 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 UQCRFS1P47985 274 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 WDR4P57081 412 aaKnown RBP16.58■□□□□ 0.24
CPSF4-209ENST00000465132 VSX2P58304 361 aaPredicted RBP16.58■□□□□ 0.24
CPSF4-209ENST00000465132 ABCE1P61221 599 aaKnown RBP16.58■□□□□ 0.24
CPSF4-209ENST00000465132 TRAF3Q13114 568 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 CPSF6Q16630 551 aaKnown RBP eCLIP16.58■□□□□ 0.24
CPSF4-209ENST00000465132 FRG2Q64ET8 278 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 CHSY3Q70JA7 882 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 CSNK1A1LQ8N752 337 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 GALNT11Q8NCW6 608 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 OR52B6Q8NGF0 335 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 LRFN5Q96NI6 719 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 NSUN5Q96P11 429 aaKnown RBP16.58■□□□□ 0.24
CPSF4-209ENST00000465132 FRG2BQ96QU4 278 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 ILKAPQ9H0C8 392 aaPredicted RBP16.58■□□□□ 0.24
CPSF4-209ENST00000465132 ING2Q9H160 280 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 FAM60AQ9NP50 221 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 ACSS2Q9NR19 701 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 TXLNGQ9NUQ3 528 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 THAP1Q9NVV9 213 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 PPT2Q9UMR5 302 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 VPS4AQ9UN37 437 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 CDC14AQ9UNH5 594 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 SH2B3Q9UQQ2 575 aa16.58■□□□□ 0.24
CPSF4-209ENST00000465132 MDC1Q14676 2089 aaKnown RBP16.58■□□□□ 0.24
CPSF4-209ENST00000465132 FEZF1A0PJY2 475 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 H0YGG7 62 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 FOXE1O00358 373 aaPredicted RBP16.57■□□□□ 0.24
CPSF4-209ENST00000465132 EIF2S1P05198 315 aaKnown RBP16.57■□□□□ 0.24
CPSF4-209ENST00000465132 KLK3P07288 261 aaPredicted RBP16.57■□□□□ 0.24
CPSF4-209ENST00000465132 SERPINA6P08185 405 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 UROSP10746 265 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 PIM1P11309 404 aaPredicted RBP16.57■□□□□ 0.24
CPSF4-209ENST00000465132 PCNAP12004 261 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 HSD3B1P14060 373 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 PTX3P26022 381 aaPredicted RBP16.57■□□□□ 0.24
CPSF4-209ENST00000465132 HSD3B2P26439 372 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 SLC1A6P48664 564 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 CCL11P51671 97 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 HK2P52789 917 aa16.57■□□□□ 0.24
CPSF4-209ENST00000465132 ARFIP1P53367 373 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms