RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 GDF6Q6KF10 455 aaPredicted RBP7.01□□□□□ -1.29
USP48-206ENST00000464577 TRAF7Q6Q0C0 670 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 CCDC149Q6ZUS6 474 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 PTCHD4Q6ZW05 846 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 C11orf74Q86VG3 221 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 BBS7Q8IWZ6 715 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 NPAS3Q8IXF0 933 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 NXPE1Q8N323 547 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 CBARPQ8N350 705 aaPredicted RBP7.01□□□□□ -1.29
USP48-206ENST00000464577 CLDN19Q8N6F1 224 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 TTC9BQ8N6N2 239 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 CLDN22Q8N7P3 220 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 ATAD1Q8NBU5 361 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 TTC16Q8NEE8 873 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 VPS37AQ8NEZ2 397 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 FBXO22Q8NEZ5 403 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 GPR152Q8TDT2 470 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 PIH1D2Q8WWB5 315 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 GEMIN6Q8WXD5 167 aaKnown RBP7.01□□□□□ -1.29
USP48-206ENST00000464577 SH3KBP1Q96B97 665 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 ZC3HAV1LQ96H79 300 aaKnown RBP7.01□□□□□ -1.29
USP48-206ENST00000464577 MS4A4AQ96JQ5 239 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 B3GALT6Q96L58 329 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 FRMD6Q96NE9 622 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 FAM129BQ96TA1 746 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 PARK7Q99497 189 aaKnown RBP7.01□□□□□ -1.29
USP48-206ENST00000464577 PIP5K1AQ99755 562 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 MND1Q9BWT6 205 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 BBS2Q9BXC9 721 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 MCOLN1Q9GZU1 580 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 MMP28Q9H239 520 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 EXOSC4Q9NPD3 245 aaKnown RBP7.01□□□□□ -1.29
USP48-206ENST00000464577 IL26Q9NPH9 171 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 DNAJC11Q9NVH1 559 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 NDOR1Q9UHB4 597 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 NUFIP1Q9UHK0 495 aaKnown RBP7.01□□□□□ -1.29
USP48-206ENST00000464577 CRLS1Q9UJA2 301 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 DNMT3LQ9UJW3 386 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 VPS4AQ9UN37 437 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 SATB2Q9UPW6 733 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 TMA7Q9Y2S6 64 aaKnown RBP7.01□□□□□ -1.29
USP48-206ENST00000464577 PCDHB9Q9Y5E1 797 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 SCN8AQ9UQD0 1980 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 DSPPQ9NZW4 1301 aa7.01□□□□□ -1.29
USP48-206ENST00000464577 CCL15-CCL14A0A0B4J2E2 113 aa7□□□□□ -1.29
USP48-206ENST00000464577 A0A0G2JMP0 313 aa7□□□□□ -1.29
USP48-206ENST00000464577 GLYATL1P3A0A0U1RQE8 302 aa7□□□□□ -1.29
USP48-206ENST00000464577 AGAP14A8MT82 685 aa7□□□□□ -1.29
USP48-206ENST00000464577 ARHGEF9O43307 516 aa7□□□□□ -1.29
USP48-206ENST00000464577 B4GALT3O60512 393 aa7□□□□□ -1.29
USP48-206ENST00000464577 ICMTO60725 284 aa7□□□□□ -1.29
USP48-206ENST00000464577 ZNF780AO75290 641 aaPredicted RBP7□□□□□ -1.29
USP48-206ENST00000464577 TNFRSF21O75509 655 aa7□□□□□ -1.29
USP48-206ENST00000464577 CYP7B1O75881 506 aa7□□□□□ -1.29
USP48-206ENST00000464577 PDE9AO76083 593 aa7□□□□□ -1.29
USP48-206ENST00000464577 DDNO94850 711 aaPredicted RBP7□□□□□ -1.29
USP48-206ENST00000464577 TRBC1P01850 177 aa7□□□□□ -1.29
USP48-206ENST00000464577 CSF3P09919 207 aa7□□□□□ -1.29
USP48-206ENST00000464577 ALPIP09923 528 aa7□□□□□ -1.29
USP48-206ENST00000464577 MPC1LP0DKB6 136 aa7□□□□□ -1.29
USP48-206ENST00000464577 HSD3B1P14060 373 aa7□□□□□ -1.29
USP48-206ENST00000464577 M6PRP20645 277 aa7□□□□□ -1.29
USP48-206ENST00000464577 CPN2P22792 545 aa7□□□□□ -1.29
USP48-206ENST00000464577 AZGP1P25311 298 aaKnown RBP7□□□□□ -1.29
USP48-206ENST00000464577 HSD3B2P26439 372 aa7□□□□□ -1.29
USP48-206ENST00000464577 AQP1P29972 269 aa7□□□□□ -1.29
USP48-206ENST00000464577 XCR1P46094 333 aa7□□□□□ -1.29
USP48-206ENST00000464577 GZMKP49863 264 aa7□□□□□ -1.29
USP48-206ENST00000464577 CRISP1P54107 249 aa7□□□□□ -1.29
USP48-206ENST00000464577 GPLD1P80108 840 aa7□□□□□ -1.29
USP48-206ENST00000464577 FAPQ12884 760 aa7□□□□□ -1.29
USP48-206ENST00000464577 MLLT11Q13015 90 aaPredicted RBP7□□□□□ -1.29
USP48-206ENST00000464577 TARDBPQ13148 414 aaKnown RBP eCLIP7□□□□□ -1.29
USP48-206ENST00000464577 EFR3AQ14156 821 aa7□□□□□ -1.29
USP48-206ENST00000464577 MBTPS1Q14703 1052 aa7□□□□□ -1.29
USP48-206ENST00000464577 NCF4Q15080 339 aa7□□□□□ -1.29
USP48-206ENST00000464577 QPRTQ15274 297 aa7□□□□□ -1.29
USP48-206ENST00000464577 CCL15Q16663 113 aa7□□□□□ -1.29
USP48-206ENST00000464577 ZXDCQ2QGD7 858 aaPredicted RBP7□□□□□ -1.29
USP48-206ENST00000464577 TRIM60Q495X7 471 aa7□□□□□ -1.29
USP48-206ENST00000464577 CTXN3Q4LDR2 81 aa7□□□□□ -1.29
USP48-206ENST00000464577 GCNT6Q5T4J0 391 aa7□□□□□ -1.29
USP48-206ENST00000464577 CPTPQ5TA50 214 aa7□□□□□ -1.29
USP48-206ENST00000464577 LIPJQ5W064 366 aa7□□□□□ -1.29
USP48-206ENST00000464577 RNF219Q5W0B1 726 aaPredicted RBP7□□□□□ -1.29
USP48-206ENST00000464577 CXorf57Q6NSI4 855 aaKnown RBP7□□□□□ -1.29
USP48-206ENST00000464577 HSDL2Q6YN16 418 aa7□□□□□ -1.29
USP48-206ENST00000464577 FAM92BQ6ZTR7 304 aa7□□□□□ -1.29
USP48-206ENST00000464577 RFPL4BQ6ZWI9 263 aa7□□□□□ -1.29
USP48-206ENST00000464577 UBE2R2Q712K3 238 aaPredicted RBP7□□□□□ -1.29
USP48-206ENST00000464577 ZNF767PQ75MW2 155 aa7□□□□□ -1.29
USP48-206ENST00000464577 UTS2BQ765I0 119 aa7□□□□□ -1.29
USP48-206ENST00000464577 DDX53Q86TM3 631 aaKnown RBP7□□□□□ -1.29
USP48-206ENST00000464577 LAS2Q8IYD9 372 aa7□□□□□ -1.29
USP48-206ENST00000464577 FAM109AQ8N4B1 249 aa7□□□□□ -1.29
USP48-206ENST00000464577 IL17RCQ8NAC3 791 aa7□□□□□ -1.29
USP48-206ENST00000464577 FAM46DQ8NEK8 389 aa7□□□□□ -1.29
USP48-206ENST00000464577 OR9Q2Q8NGE9 314 aa7□□□□□ -1.29
USP48-206ENST00000464577 OR9Q1Q8NGQ5 310 aa7□□□□□ -1.29
USP48-206ENST00000464577 BRI3BPQ8WY22 251 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms