RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 CTAGE6Q86UF2 777 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 ARMC10Q8N2F6 343 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 UTP15Q8TED0 518 aaKnown RBP21.17■□□□□ 0.98
USP4-208ENST00000464168 NEIL2Q969S2 332 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 ZFP69BQ9UJL9 534 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 IGKV3D-11A0A0A0MRZ8 115 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 CAPN3P20807 821 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 MAOAP21397 527 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 PGGT1BP53609 377 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 AP1S2P56377 157 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 IL2P60568 153 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 TESK1Q15569 626 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 ABHD13Q7L211 337 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 TBC1D19Q8N5T2 526 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 FBXL8Q96CD0 374 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 CLK4Q9HAZ1 481 aaKnown RBP21.16■□□□□ 0.98
USP4-208ENST00000464168 PPT2Q9UMR5 302 aa21.16■□□□□ 0.98
USP4-208ENST00000464168 TCRBV16S1A1N1A0A5B0 115 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 AHRP35869 848 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 RAB8AP61006 207 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 CSHL1Q14406 222 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 CNTN4Q8IWV2 1026 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 PPIL6Q8IXY8 311 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 ANKRD53Q8N9V6 530 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 POGLUT1Q8NBL1 392 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 CA5BP1Q8WTZ4 195 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 TMEM125Q96AQ2 219 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 SDCCAG3Q96C92 435 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 TREX2Q9BQ50 279 aaPredicted RBP21.15■□□□□ 0.98
USP4-208ENST00000464168 DEFB126Q9BYW3 111 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 SLC6A16Q9GZN6 736 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 NECTIN3Q9NQS3 549 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 PRDM9Q9NQV7 894 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 HRH3Q9Y5N1 445 aa21.15■□□□□ 0.98
USP4-208ENST00000464168 SMIM10L1P0DMW3 83 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 HNF4AP41235 474 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 MEOX1P50221 254 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 TLE4Q04727 773 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 HYAL2Q12891 473 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 RNASEH2BQ5TBB1 312 aaKnown RBP21.14■□□□□ 0.97
USP4-208ENST00000464168 KIAA0408Q6ZU52 694 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 SULF2Q8IWU5 870 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 EID3Q8N140 333 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 SLC5A11Q8WWX8 675 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 ATL1Q8WXF7 558 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 SMIM10Q96HG1 83 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 TSNARE1Q96NA8 513 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 TRIM54Q9BYV2 358 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 KLHL31Q9H511 634 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 MCCC2Q9HCC0 563 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 ZFATQ9P243 1243 aa21.14■□□□□ 0.97
USP4-208ENST00000464168 KLF13Q9Y2Y9 288 aaPredicted RBP21.14■□□□□ 0.97
USP4-208ENST00000464168 A0A1B0GTH9 108 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 A8MUA0 341 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 FCHO1O14526 889 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 BANF1O75531 89 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 GUCA1CO95843 209 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 RNH1P13489 461 aaKnown RBP21.13■□□□□ 0.97
USP4-208ENST00000464168 PTGS2P35354 604 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 RFC3P40938 356 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 REEP5Q00765 189 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 MEX3BQ6ZN04 569 aaKnown RBP21.13■□□□□ 0.97
USP4-208ENST00000464168 APCDD1LQ8NCL9 501 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 GABPB2Q8TAK5 448 aaPredicted RBP21.13■□□□□ 0.97
USP4-208ENST00000464168 FAM57AQ8TBR7 257 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 CHTF18Q8WVB6 975 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 PBKQ96KB5 322 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 RHBGQ9H310 441 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 SLC17A6Q9P2U8 582 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 IKZF3Q9UKT9 509 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 MED13LQ71F56 2210 aa21.13■□□□□ 0.97
USP4-208ENST00000464168 PABPN1LA6NDY0 278 aaKnown RBP21.12■□□□□ 0.97
USP4-208ENST00000464168 C4orf51C9J302 202 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 KLRC4-KLRK1H3BQV0 150 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 TFECO14948 347 aaPredicted RBP21.12■□□□□ 0.97
USP4-208ENST00000464168 PEX1O43933 1283 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 TTC4O95801 387 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 PDAP1Q13442 181 aaKnown RBP21.12■□□□□ 0.97
USP4-208ENST00000464168 MSS51Q4VC12 460 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 SPANXN3Q5MJ09 141 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 GALNT7Q86SF2 657 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 IGDCC3Q8IVU1 814 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 MARVELD2Q8N4S9 558 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 TRPV3Q8NET8 790 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 C16orf52Q8NHV5 167 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 AICDAQ9GZX7 198 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 PLAC1Q9HBJ0 212 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 COQ3Q9NZJ6 369 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 VWA7Q9Y334 891 aa21.12■□□□□ 0.97
USP4-208ENST00000464168 URADA6NGE7 173 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 PSMD12O00232 456 aaPredicted RBP21.11■□□□□ 0.97
USP4-208ENST00000464168 HS6ST1O60243 411 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 TPOP07202 933 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 ENO2P09104 434 aaPredicted RBP21.11■□□□□ 0.97
USP4-208ENST00000464168 CMPK2Q5EBM0 449 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 TEDDM1Q5T9Z0 273 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 HECTD2Q5U5R9 776 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 NXPE4Q6UWF7 544 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 SBSNQ6UWP8 590 aa21.11■□□□□ 0.97
USP4-208ENST00000464168 MDGA2Q7Z553 956 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms