RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SERPINB9P50453 376 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 IRF8Q02556 426 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 DOC2AQ14183 400 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 TBCCQ15814 346 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 LANCL3Q6ZV70 420 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 TAOK1Q7L7X3 1001 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 BRIX1Q8TDN6 353 aaKnown RBP21.67■■□□□ 1.06
PTPN4-208ENST00000460289 PSMF1Q92530 271 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 GAL3ST3Q96A11 431 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 PTGFRNQ9P2B2 879 aa21.67■■□□□ 1.06
PTPN4-208ENST00000460289 A0A088AWK7 358 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 LRIT2A6NDA9 550 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 OR2W5A6NFC9 320 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 MAGEB17A8MXT2 336 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 UBXN8O00124 270 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 CDC123O75794 336 aaPredicted RBP21.66■■□□□ 1.06
PTPN4-208ENST00000460289 B3GALT4O96024 378 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 ALDOAP04075 364 aaKnown RBP21.66■■□□□ 1.06
PTPN4-208ENST00000460289 UQCRHP07919 91 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 ZNF10P21506 573 aaPredicted RBP21.66■■□□□ 1.06
PTPN4-208ENST00000460289 CASP2P42575 452 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 OLR1P78380 273 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 IRF9Q00978 393 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 RHAGQ02094 409 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 CHIT1Q13231 466 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 ABRAXAS2Q15018 415 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 UBAP2Q5T6F2 1119 aaKnown RBP21.66■■□□□ 1.06
PTPN4-208ENST00000460289 UBTD2Q8WUN7 234 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 UBE2E3Q969T4 207 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 PAFAH2Q99487 392 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 RBCK1Q9BYM8 510 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 MAP10Q9P2G4 905 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 OPTCQ9UBM4 332 aa21.66■■□□□ 1.06
PTPN4-208ENST00000460289 ZNF490Q9ULM2 529 aaPredicted RBP21.66■■□□□ 1.06
PTPN4-208ENST00000460289 A0A087WUV0 522 aaPredicted RBP21.65■■□□□ 1.06
PTPN4-208ENST00000460289 IGHV3-20A0A0C4DH32 117 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 K7EPI3 171 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 PSMD12O00232 456 aaPredicted RBP21.65■■□□□ 1.06
PTPN4-208ENST00000460289 PRAMEF4O60810 478 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 DNAJB6O75190 326 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 KRT38O76015 456 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 SEC24DO94855 1032 aaPredicted RBP21.65■■□□□ 1.06
PTPN4-208ENST00000460289 RNH1P13489 461 aaKnown RBP21.65■■□□□ 1.06
PTPN4-208ENST00000460289 CNTFP26441 200 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 SOX11P35716 441 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 MSH2P43246 934 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 GLRBP48167 497 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 BTN3A2P78410 334 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 ACTN3Q08043 901 aaPredicted RBP21.65■■□□□ 1.06
PTPN4-208ENST00000460289 TLR1Q15399 786 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 PRAMEF9Q5VWM5 478 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 PLAG1Q6DJT9 500 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 SIRT6Q8N6T7 355 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 SNRNP40Q96DI7 357 aaKnown RBP21.65■■□□□ 1.06
PTPN4-208ENST00000460289 MS4A6EQ96DS6 147 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 NPLQ9BXD5 320 aaPredicted RBP21.65■■□□□ 1.06
PTPN4-208ENST00000460289 SLC29A3Q9BZD2 475 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 VPS11Q9H270 941 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 RHBGQ9H310 441 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 TEKT2Q9UIF3 430 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 NFU1Q9UMS0 254 aa21.65■■□□□ 1.06
PTPN4-208ENST00000460289 DYTNA2CJ06 578 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 ERI3O43414 337 aaKnown RBP21.64■■□□□ 1.05
PTPN4-208ENST00000460289 PRMT3O60678 531 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 B4GALT2O60909 372 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 MTHFD2P13995 350 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 EPB42P16452 691 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 EPORP19235 508 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 HNRNPH1P31943 449 aaKnown RBP21.64■■□□□ 1.05
PTPN4-208ENST00000460289 PCDH1Q08174 1060 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 E2F2Q14209 437 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 EXT1Q16394 746 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 BTBD16Q32M84 506 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 CUZD1Q86UP6 607 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 CISD2Q8N5K1 135 aaKnown RBP21.64■■□□□ 1.05
PTPN4-208ENST00000460289 CNDP1Q96KN2 507 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 PTCHD1Q96NR3 888 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 LPAR4Q99677 370 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 REXO4Q9GZR2 422 aaKnown RBP21.64■■□□□ 1.05
PTPN4-208ENST00000460289 AICDAQ9GZX7 198 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 ZNF180Q9UJW8 692 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 ASB1Q9Y576 335 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 PCDHGA10Q9Y5H3 936 aa21.64■■□□□ 1.05
PTPN4-208ENST00000460289 COPG1Q9Y678 874 aaKnown RBP21.64■■□□□ 1.05
PTPN4-208ENST00000460289 POC1B-GALNT4F8VUJ3 575 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 CELA2AP08217 269 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 ITGAMP11215 1152 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 GFAPP14136 432 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 ALDH18A1P54886 795 aaKnown RBP21.63■■□□□ 1.05
PTPN4-208ENST00000460289 OR4D2P58180 307 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 ARG2P78540 354 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 TGM3Q08188 693 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 ZNF169Q14929 603 aaPredicted RBP21.63■■□□□ 1.05
PTPN4-208ENST00000460289 PFKFB4Q16877 469 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 ADPRMQ3LIE5 342 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 PRR30Q53SZ7 412 aaPredicted RBP21.63■■□□□ 1.05
PTPN4-208ENST00000460289 SFT2D3Q587I9 215 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 B3GNTL1Q67FW5 361 aaPredicted RBP21.63■■□□□ 1.05
PTPN4-208ENST00000460289 TRIM40Q6P9F5 258 aa21.63■■□□□ 1.05
PTPN4-208ENST00000460289 QSOX2Q6ZRP7 698 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms