RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 LRRC1Q9BTT6 524 aa18.24■□□□□ 0.51
USP40-207ENST00000450940 MMP25Q9NPA2 562 aa18.24■□□□□ 0.51
USP40-207ENST00000450940 DNAJC11Q9NVH1 559 aa18.24■□□□□ 0.51
USP40-207ENST00000450940 STMN3Q9NZ72 180 aa18.24■□□□□ 0.51
USP40-207ENST00000450940 TEKT2Q9UIF3 430 aa18.24■□□□□ 0.51
USP40-207ENST00000450940 SVILO95425 2214 aa18.24■□□□□ 0.51
USP40-207ENST00000450940 NAV2Q8IVL1 2488 aa18.24■□□□□ 0.51
USP40-207ENST00000450940 DOPEY1Q5JWR5 2465 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 C4orf51C9J302 202 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 E2F3O00716 465 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 PRAMEF4O60810 478 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 STK16O75716 305 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 CDC123O75794 336 aaPredicted RBP18.23■□□□□ 0.51
USP40-207ENST00000450940 DDAH2O95865 285 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 SLC35E2BP0CK96 405 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 EDN3P14138 238 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 HNF4AP41235 474 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 RAB8AP61006 207 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 STXBP1P61764 594 aaKnown RBP18.23■□□□□ 0.51
USP40-207ENST00000450940 OLR1P78380 273 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 SLC7A5Q01650 507 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 E2F2Q14209 437 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 SLBPQ14493 270 aaKnown RBP eCLIP18.23■□□□□ 0.51
USP40-207ENST00000450940 TOR1AIP1Q5JTV8 583 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 PRAMEF9Q5VWM5 478 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 PAPD4Q6PIY7 484 aaKnown RBP18.23■□□□□ 0.51
USP40-207ENST00000450940 ISCA2Q86U28 154 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.23■□□□□ 0.51
USP40-207ENST00000450940 KRT78Q8N1N4 520 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 TSLPQ969D9 159 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 LPAR4Q99677 370 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 SLX1AQ9BQ83 275 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 RBCK1Q9BYM8 510 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 WWOXQ9NZC7 414 aa18.23■□□□□ 0.51
USP40-207ENST00000450940 IGKV3D-11A0A0A0MRZ8 115 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 ESYT3A0FGR9 886 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 LRIT2A6NDA9 550 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 OR5H15A6NDH6 313 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 CLEC3AO75596 197 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 TBX6O95947 436 aaPredicted RBP18.22■□□□□ 0.51
USP40-207ENST00000450940 RNH1P13489 461 aaKnown RBP18.22■□□□□ 0.51
USP40-207ENST00000450940 CRABP2P29373 138 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 HSPA7P48741 367 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 OR4D2P58180 307 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 ACTN3Q08043 901 aaPredicted RBP18.22■□□□□ 0.51
USP40-207ENST00000450940 DLG1Q12959 904 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 WHAMMP3Q1A5X7 153 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 ADPRMQ3LIE5 342 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 ACER2Q5QJU3 275 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 C8orf74Q6P047 294 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 STAG3L4Q8TBR4 150 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 GAL3ST3Q96A11 431 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 MS4A6EQ96DS6 147 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 ZNF354BQ96LW1 612 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 TAAR6Q96RI8 345 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 CD274Q9NZQ7 290 aa18.22■□□□□ 0.51
USP40-207ENST00000450940 ZNF490Q9ULM2 529 aaPredicted RBP18.22■□□□□ 0.51
USP40-207ENST00000450940 CLGNO14967 610 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 PRMT3O60678 531 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 RNF224P0DH78 156 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 EPORP19235 508 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 HNRNPH1P31943 449 aaKnown RBP18.21■□□□□ 0.51
USP40-207ENST00000450940 GMPRP36959 345 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 CASP2P42575 452 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 SLC26A5P58743 744 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 BTG2P78543 158 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 ZNF33BQ06732 778 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 PCDH1Q08174 1060 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 DOC2AQ14183 400 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 ELOAQ14241 798 aaKnown RBP18.21■□□□□ 0.51
USP40-207ENST00000450940 TBCCQ15814 346 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 FAM180AQ6UWF9 173 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 VN1R5Q7Z5H4 357 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 CCDC91Q7Z6B0 441 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 CMC1Q7Z7K0 106 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 RELL1Q8IUW5 271 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 CA13Q8N1Q1 262 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 BCORP1Q8N888 145 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 ESAMQ96AP7 390 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 PTCD3Q96EY7 689 aaKnown RBP18.21■□□□□ 0.51
USP40-207ENST00000450940 PTCHD1Q96NR3 888 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 QRFPRQ96P65 431 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 ATOH8Q96SQ7 321 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 NPAS2Q99743 824 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 EFCAB11Q9BUY7 163 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 NPLQ9BXD5 320 aaPredicted RBP18.21■□□□□ 0.51
USP40-207ENST00000450940 CD244Q9BZW8 370 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 RHBGQ9H310 441 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 KCNK13Q9HB14 408 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 NMRAL1Q9HBL8 299 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 PRDM9Q9NQV7 894 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 IGSF5Q9NSI5 407 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 ERRFI1Q9UJM3 462 aaPredicted RBP18.21■□□□□ 0.51
USP40-207ENST00000450940 RNF112Q9ULX5 631 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 PCDHGB6Q9Y5F9 930 aa18.21■□□□□ 0.51
USP40-207ENST00000450940 TCRBV16S1A1N1A0A5B0 115 aa18.2■□□□□ 0.5
USP40-207ENST00000450940 HMX2A2RU54 273 aa18.2■□□□□ 0.5
USP40-207ENST00000450940 A8MUI8 341 aa18.2■□□□□ 0.5
USP40-207ENST00000450940 CDK2AP1O14519 115 aa18.2■□□□□ 0.5
USP40-207ENST00000450940 PRAMEF2O60811 474 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms