RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CD86P42081 329 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 AMTP48728 403 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 GLUD2P49448 558 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 GAGE1Q13065 139 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 GAGE4Q13068 117 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 PRKAA1Q13131 559 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 ZNF718Q3SXZ3 478 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 TMEM35AQ53FP2 167 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 LACTB2Q53H82 288 aaPredicted RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 ASPRV1Q53RT3 343 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 RAB6CQ53S08 254 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 FAM69BQ5VUD6 431 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 Q75L30 129 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 ARHGAP24Q8N264 748 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 PPFIBP2Q8ND30 876 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 OR14A16Q8NHC5 309 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 VANGL1Q8TAA9 524 aaPredicted RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 TBCKQ8TEA7 893 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 SLC38A5Q8WUX1 472 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 TMEM255BQ8WV15 326 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 CENPTQ96BT3 561 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 CCDC51Q96ER9 411 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 THOC1Q96FV9 657 aaKnown RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 C3orf30Q96M34 536 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 RAD9AQ99638 391 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 C1QTNF4Q9BXJ3 329 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 COA1Q9GZY4 146 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 ZMYND12Q9H0C1 365 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 RAB6CQ9H0N0 254 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 ABCG8Q9H221 673 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 C1orf21Q9H246 121 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 LZTFL1Q9NQ48 299 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 EXOC1Q9NV70 894 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 CYP39A1Q9NYL5 469 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 B3GAT1Q9P2W7 334 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 EPS15L1Q9UBC2 864 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 KCNG2Q9UJ96 466 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 AGO1Q9UL18 857 aaKnown RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 SPIN1Q9Y657 262 aaPredicted RBP3.87□□□□□ -1.79
VPS29-202ENST00000447578 GAKO14976 1311 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 THSD7AQ9UPZ6 1657 aa3.87□□□□□ -1.79
VPS29-202ENST00000447578 DLEC1Q9Y238 1755 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 BTAF1O14981 1849 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 A0A0A6YYC8 382 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 A0A0U1RQJ8 604 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 RNF103-CHMP3A0A140T963 221 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 ESYT2A0FGR8 921 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 MED19A0JLT2 244 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 OR5K3A6NET4 321 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 SRRM3A6NNA2 597 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 ANKRD66B4E2M5 251 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 KBTBD13C9JR72 458 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 TMEM178BH3BS89 294 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 I3L1I5 382 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 RNF103O00237 685 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 CAPN9O14815 690 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 CTDSPLO15194 276 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 TTI1O43156 1089 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 BUD23O43709 281 aaKnown RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 KLRC4O43908 158 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 PRAF2O60831 178 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 RFPL2O75678 378 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 RAD51DO75771 328 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 TDP2O95551 362 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 ANKRD34CP0C6C1 535 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 FCGR1AP12314 374 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 H2AFXP16104 143 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 EPCAMP16422 314 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 ZNF12P17014 697 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 S1PR1P21453 382 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 NOVP48745 357 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 LUMP51884 338 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 STARD6P59095 220 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 FOLH1Q04609 750 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 GFPT1Q06210 699 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 GABPAQ06546 454 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 PNRC1Q12796 327 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 OASLQ15646 514 aaKnown RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 CALCRLQ16602 461 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 UBE2SQ16763 222 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 CTU2Q2VPK5 515 aaKnown RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 SYT14P1Q58G82 188 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 TOR1AIP1Q5JTV8 583 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 TEX35Q5T0J7 233 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 GRTP1Q5TC63 336 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 C11orf63Q6NUN7 778 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 PODNL1Q6PEZ8 512 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 CCNI2Q6ZMN8 369 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 CFAP206Q8IYR0 622 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 RNF113BQ8IZP6 322 aaKnown RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 KRT222Q8N1A0 295 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 CERS5Q8N5B7 392 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 CSGALNACT2Q8N6G5 542 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 THAP8Q8NA92 274 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 NEXN-AS1Q8NBZ9 246 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 LILRB1Q8NHL6 650 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 LRRC15Q8TF66 581 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 PROX1Q92786 737 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 BCL2L2Q92843 193 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 P2RX5Q93086 422 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms