RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF675Q8TD23 568 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TMEM234Q8WY98 164 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RBM18Q96H35 190 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 FCRL2Q96LA5 508 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 SLC25A31Q9H0C2 315 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PIF1Q9H611 641 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PATZ1Q9HBE1 687 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 VAPAQ9P0L0 249 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ZFR2Q9UPR6 939 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 SLC22A7Q9Y694 548 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 CYB5BO43169 146 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 SLC16A8O95907 504 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TMEM69Q5SWH9 247 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 LRRN4Q8WUT4 740 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RAB39BQ96DA2 213 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PNO1Q9NRX1 252 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 PNPOQ9NVS9 261 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 SLC35F4A4IF30 521 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 WTIPA6NIX2 430 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 GRM6O15303 877 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RGS9O75916 674 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 CDK1P06493 297 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ELFN1P0C7U0 828 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ZNF30P17039 623 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 GSK3BP49841 420 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 BLKP51451 505 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 BAK1Q16611 211 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 XYLT1Q86Y38 959 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ACTL8Q9H568 366 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 KCNK13Q9HB14 408 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RNF19AQ9NV58 838 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 MED31Q9Y3C7 131 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 EVPLQ92817 2033 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TSPAN15O95858 294 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 HNRNPLP14866 589 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS53-204ENST00000437048 VLDLRP98155 873 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 DSC3Q14574 896 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TBCEQ15813 527 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 AGAP7PQ5VUJ5 663 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 FAM122BQ7Z309 247 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 CLDN22Q8N7P3 220 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 COX18Q8N8Q8 333 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 LYRM2Q9NU23 88 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 ABRACLQ9P1F3 81 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ZNF175Q9Y473 711 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RNF212BA8MTL3 300 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 H7C1Q1 480 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 NDUFB5O43674 189 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 GPRIN2O60269 458 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 AZGP1P25311 298 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 CCR8P51685 355 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RCAN2Q14206 197 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 OTUD1Q5VV17 481 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 MAL2Q969L2 176 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 SRA1Q9HD15 236 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 ACTR10Q9NZ32 417 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ABHD14A-ACY1A0A1B0GW23 586 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 CD48P09326 243 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ZDHHC11BP0C7U3 371 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ADORA2AP29274 412 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 VEZF1Q14119 521 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ESCO2Q56NI9 601 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 WDR88Q6ZMY6 472 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 SLC16A9Q7RTY1 509 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 OR4F6Q8NGB9 312 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 OR8D1Q8WZ84 308 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 DNASE1L2Q92874 299 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 CMTM7Q96FZ5 175 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 SMCO4Q9NRQ5 59 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TMEM100Q9NV29 134 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 A0A1W2PRB8 838 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 CLIC1O00299 241 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 SYN3O14994 580 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 CILPO75339 1184 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 ITGB1P05556 798 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 CHRNB1P11230 501 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 CPN2P22792 545 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 CLK2P49760 499 aaKnown RBP6.96□□□□□ -1.29
VPS53-204ENST00000437048 ATXN1P54253 815 aaKnown RBP6.96□□□□□ -1.29
VPS53-204ENST00000437048 SPHARQ15513 63 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 VSIG10LQ86VR7 867 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 METTL4Q8N3J2 472 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 TMBIM1Q969X1 311 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 OSGEPL1Q9H4B0 414 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 MED17Q9NVC6 651 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 NLKQ9UBE8 527 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 SCN4AP35499 1836 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 GGT3PA6NGU5 568 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 EPHX2P34913 555 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 GGT2P36268 569 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 DSTNP60981 165 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 CAP1Q01518 475 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 ST3GAL4Q11206 333 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 GK5Q6ZS86 529 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 OR2AJ1Q8NGZ0 328 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 KCNJ9Q92806 393 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 C11orf49Q9H6J7 331 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 VRTNQ9H8Y1 702 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 WIF1Q9Y5W5 379 aa6.96□□□□□ -1.29
VPS53-204ENST00000437048 ISM1B1AKI9 464 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms