RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 LYSMD2Q8IV50 215 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 CHPFQ8IZ52 775 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 ALDH16A1Q8IZ83 802 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 SVOPLQ8N434 492 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 HUS1BQ8NHY5 278 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 CLIP3Q96DZ5 547 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 FAM129BQ96TA1 746 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 TBX5Q99593 518 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 SLC35A5Q9BS91 424 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 KCNH6Q9H252 994 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 IL1RAPQ9NPH3 570 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 TBCCD1Q9NVR7 557 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 TVP23BQ9NYZ1 205 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 VPS29Q9UBQ0 182 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 SAMD4AQ9UPU9 718 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 TMEM98Q9Y2Y6 226 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 DOCK9Q9BZ29 2069 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 PATJQ8NI35 1801 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 TRBV23OR9-2A0A075B6M9 112 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ACRP10323 421 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 AMD1P17707 334 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 SERPINA4P29622 427 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 CLDN8P56748 225 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 DUSP7Q16829 419 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 DUOXA1Q1HG43 343 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ARMC4Q5T2S8 1044 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 SDE2Q6IQ49 451 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 RETSATQ6NUM9 610 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 NLRP8Q86W28 1048 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 SETD9Q8NE22 299 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 GPR151Q8TDV0 419 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 PHF10Q8WUB8 498 aaKnown RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 NEIL2Q969S2 332 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 TADA1Q96BN2 335 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ZNF300Q96RE9 604 aaPredicted RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 TSPAN18Q96SJ8 248 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 VN1R3Q9BXE9 311 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ITPAQ9BY32 194 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 MROQ9BYG7 248 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 WDR12Q9GZL7 423 aaKnown RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 TMEM9Q9P0T7 183 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 MKL2Q9ULH7 1088 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 CLCA3PQ9Y6N3 262 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ARHGEF33A8MVX0 844 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 K7ESM1 405 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 BCHEP06276 602 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 EBLN1P0CF75 366 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ITIH1P19827 911 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 FPR1P21462 350 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 TGM1P22735 817 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 CRYBA2P53672 197 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ALDH6A1Q02252 535 aaKnown RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 VEPH1Q14D04 833 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ZNF750Q32MQ0 723 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 SPANXN2Q5MJ10 180 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 SHQ1Q6PI26 577 aaKnown RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 TMEM220Q6QAJ8 160 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 DGLUCYQ7Z3D6 616 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 LAX1Q8IWV1 398 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 LEMD2Q8NC56 503 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 OR5D16Q8NGK9 328 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 SMAP2Q8WU79 429 aaPredicted RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 XAGE5Q8WWM1 108 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 CASD1Q96PB1 797 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 FYTTD1Q96QD9 318 aaKnown RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 C2orf49Q9BVC5 232 aaPredicted RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 ZNF556Q9HAH1 456 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 POPDC3Q9HBV1 291 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 C12orf4Q9NQ89 552 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 TMPRSS11EQ9UL52 423 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 GPSM3Q9Y4H4 160 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 VPS13AQ96RL7 3174 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 MEN1O00255 615 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 DSCR3O14972 297 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 KLK8O60259 260 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ERN1O75460 977 aaKnown RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 GABARAPO95166 117 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 CCNDBP1O95273 360 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 URODP06132 367 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 OR56A5P0C7T3 313 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 PSMB5P28074 263 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 HLA-FP30511 346 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 SLC5A12Q1EHB4 618 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 INO80DQ53TQ3 878 aaPredicted RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 AGTRAPQ6RW13 159 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 EIF3MQ7L2H7 374 aaKnown RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 GDPD3Q7L5L3 318 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 TCEANCQ8N8B7 351 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 HJURPQ8NCD3 748 aaPredicted RBP8.31□□□□□ -1.08
USP40-203ENST00000427112 TMEM159Q96B96 161 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 TCEAL4Q96EI5 215 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 TMEM169Q96HH4 297 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 UROC1Q96N76 676 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 BEX1Q9HBH7 125 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 COMMD3Q9UBI1 195 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 MUTYHQ9UIF7 546 aa8.31□□□□□ -1.08
USP40-203ENST00000427112 ZSWIM8A7E2V4 1837 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 VWA8A3KMH1 1905 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 PRAMEF25A6NGN4 478 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 SLC22A1O15245 554 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms