RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 SPRP35270 261 aaPredicted RBP3.08□□□□□ -1.92
LINC01040-201ENST00000425048 PTPRCAPQ14761 206 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 ZKSCAN8Q15776 578 aaPredicted RBP3.08□□□□□ -1.92
LINC01040-201ENST00000425048 VWA2Q5GFL6 755 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 MUC21Q5SSG8 566 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 C6orf163Q5TEZ5 329 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 KRTAP5-7Q6L8G8 165 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 NBPF5PQ86XG9 351 aaPredicted RBP3.08□□□□□ -1.92
LINC01040-201ENST00000425048 NME8Q8N427 588 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 BANPQ8N9N5 519 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 EXOC6Q8TAG9 804 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 RUNDC3BQ96NL0 473 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 KCNK13Q9HB14 408 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.08□□□□□ -1.92
LINC01040-201ENST00000425048 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.08□□□□□ -1.92
LINC01040-201ENST00000425048 VNN3Q9NY84 501 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 TBC1D7Q9P0N9 293 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 RSPH14Q9UHP6 348 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 NOL7Q9UMY1 257 aaKnown RBP3.08□□□□□ -1.92
LINC01040-201ENST00000425048 PPIEQ9UNP9 301 aaKnown RBP3.08□□□□□ -1.92
LINC01040-201ENST00000425048 PLEKHA6Q9Y2H5 1048 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 CNTLNQ9NXG0 1405 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 CCDC88BA6NC98 1476 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 ABCC8Q09428 1581 aa3.08□□□□□ -1.92
LINC01040-201ENST00000425048 AK9Q5TCS8 1911 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 FER1L5A0AVI2 2057 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 ZNF853P0CG23 659 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 CD59P13987 128 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 GPX3P22352 226 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 RPL9P32969 192 aaKnown RBP3.07□□□□□ -1.92
LINC01040-201ENST00000425048 FEN1P39748 380 aaKnown RBP3.07□□□□□ -1.92
LINC01040-201ENST00000425048 CACNG1Q06432 222 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 EPS8Q12929 822 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 BECN1Q14457 450 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 DNAJC21Q5F1R6 531 aaKnown RBP3.07□□□□□ -1.92
LINC01040-201ENST00000425048 CCDC70Q6NSX1 233 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 DET1Q7L5Y6 550 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 TAGAPQ8N103 731 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 ANKRD7Q92527 254 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 ITFG2Q969R8 447 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 ALKBH3Q96Q83 286 aaPredicted RBP3.07□□□□□ -1.92
LINC01040-201ENST00000425048 TERF2IPQ9NYB0 399 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 FHAD1B1AJZ9 1412 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 ARHGAP31Q2M1Z3 1444 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 VPS8Q8N3P4 1428 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 KIAA1107Q9UPP5 1409 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 KIF21BO75037 1637 aa3.07□□□□□ -1.92
LINC01040-201ENST00000425048 BCLAF3A2AJT9 711 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 CCDC144AA2RUR9 1427 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 C17orf105B2RV13 164 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 TNFSF11O14788 317 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 TPD52L2O43399 206 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 SCO2O43819 266 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 OR6B1O95007 311 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 HCKP08631 526 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 CSH1P0DML2 217 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 CSH2P0DML3 217 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 ZNF17P17021 662 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 FASP25445 335 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 MSNP26038 577 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 U2AF2P26368 475 aaKnown RBP eCLIP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 CLIP1P30622 1438 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 MEOX2P50222 304 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 GTF2A1P52655 376 aaPredicted RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 IST1P53990 364 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 PSMC6P62333 389 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 HMGN5P82970 282 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 GOLGA3Q08378 1498 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 CHAF1BQ13112 559 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 MAP3K1Q13233 1512 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 SHROOM2Q13796 1616 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 VWC2Q2TAL6 325 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 MACC1Q6ZN28 852 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 ZNF600Q6ZNG1 722 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 ZBTB49Q6ZSB9 765 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 ANKRD23Q86SG2 305 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 KTN1Q86UP2 1357 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 DND1Q8IYX4 353 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 ZNF525Q8N782 197 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 JAKMIP2Q96AA8 810 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 RSRC1Q96IZ7 334 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 RANBP9Q96S59 729 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 EBF4Q9BQW3 602 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 MED4Q9NPJ6 270 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 RBM28Q9NW13 759 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 ZNF346Q9UL40 294 aaKnown RBP3.06□□□□□ -1.92
LINC01040-201ENST00000425048 MGAT4AQ9UM21 535 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 CPQQ9Y646 472 aa3.06□□□□□ -1.92
LINC01040-201ENST00000425048 RTEL1-TNFRSF6BF6WH68 1400 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 NCOA3Q9Y6Q9 1424 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 TRAV9-2A0A087WT02 112 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 IGLON5A6NGN9 336 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 CLDN4O14493 209 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 SIGLEC5O15389 551 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 LYPD3O95274 346 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 ATP5BP06576 529 aaKnown RBP3.05□□□□□ -1.92
LINC01040-201ENST00000425048 PCGF2P35227 344 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 BTG1P62324 171 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 RBBP7Q16576 425 aa3.05□□□□□ -1.92
LINC01040-201ENST00000425048 C1QTNF12Q5T7M4 302 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms