RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 TRAF3Q13114 568 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 IL10RAQ13651 578 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 ZRSR2Q15696 482 aaKnown RBP21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 DEFB109BQ30KR1 87 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 ADPRMQ3LIE5 342 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 GGTA1PQ4G0N0 100 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 VWA2Q5GFL6 755 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 CFAP157Q5JU67 520 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 PDSS2Q86YH6 399 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 CCNYL1Q8N7R7 359 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 ARMC2Q8NEN0 867 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 OR2L5Q8NG80 312 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 OR4F6Q8NGB9 312 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 OR51Q1Q8NH59 317 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 HUS1BQ8NHY5 278 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 VPS50Q96JG6 964 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 CDK15Q96Q40 435 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 SPSB2Q99619 263 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 ROGDIQ9GZN7 287 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 C12orf65Q9H3J6 166 aaKnown RBP21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 SOX17Q9H6I2 414 aaPredicted RBP21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 SEMA3GQ9NS98 782 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 OXSMQ9NWU1 459 aa21.87■■□□□ 1.09
SMARCB1-205ENST00000417137 RDH16O75452 317 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 PTX3P26022 381 aaPredicted RBP21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 HNRNPH1P31943 449 aaKnown RBP21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 OTX2P32243 289 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 SNRPNP63162 240 aaKnown RBP21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 BTN3A2P78410 334 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 MAT1AQ00266 395 aaKnown RBP21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 KLC1Q07866 573 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 IFT88Q13099 833 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 DDX39BQ13838 428 aaKnown RBP21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 CASP8Q14790 479 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 ATP1A1-AS1Q5TC04 95 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 FAM69BQ5VUD6 431 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 BORAQ6PGQ7 559 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 RPS27LQ71UM5 84 aaKnown RBP21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 TCP10LQ8TDR4 215 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 SREK1Q8WXA9 508 aaKnown RBP21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 FAM111AQ96PZ2 611 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 F2RL3Q96RI0 385 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 CRB3Q9BUF7 120 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 MS4A8Q9BY19 250 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 SSU72Q9NP77 194 aaKnown RBP21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 PSD3Q9NYI0 1048 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 HCN3Q9P1Z3 774 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 ACTL7BQ9Y614 415 aa21.86■■□□□ 1.09
SMARCB1-205ENST00000417137 FOXE1O00358 373 aaPredicted RBP21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 PEX12O00623 359 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 TGFB1P01137 390 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 UMODP07911 640 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 FURINP09958 794 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 TSPAN8P19075 237 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 MMP11P24347 488 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 XCR1P46094 333 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 PLA2G16P53816 162 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 NAGLUP54802 743 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 PKNOX1P55347 436 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 LCP2Q13094 533 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 SYT16Q17RD7 645 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 LIPMQ5VYY2 423 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 FRG2Q64ET8 278 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 ADNP2Q6IQ32 1131 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 SHISA6Q6ZSJ9 500 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 GPRIN3Q6ZVF9 776 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 PRSS58Q8IYP2 241 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 ADAMTS17Q8TE56 1095 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 APOBEC4Q8WW27 367 aaKnown RBP21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 KCNC2Q96PR1 638 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 FRG2BQ96QU4 278 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 ZNF382Q96SR6 550 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 MTERF1Q99551 399 aaKnown RBP21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 TBCDQ9BTW9 1192 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 NPLQ9BXD5 320 aaPredicted RBP21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 ELOVL6Q9H5J4 265 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 COPS7BQ9H9Q2 264 aaPredicted RBP21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 TRPS1Q9UHF7 1281 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 C3orf18Q9UK00 162 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 SNX6Q9UNH7 406 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 MAN2B2Q9Y2E5 1009 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 PTPRQQ9UMZ3 2332 aa21.85■■□□□ 1.09
SMARCB1-205ENST00000417137 H3BQF6 201 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 FFAR3O14843 346 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 PCDH17O14917 1159 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 GPR42O15529 346 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 TRIM13O60858 407 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 BMP10O95393 424 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 TBX6O95947 436 aaPredicted RBP21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 HEXBP07686 556 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 CCR10P46092 362 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 EMP2P54851 167 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 TBR1Q16650 682 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 TNFAIP8L3Q5GJ75 292 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 DEPDC1Q5TB30 811 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 KHDRBS2Q5VWX1 349 aaKnown RBP21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 ABHD17CQ6PCB6 329 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 EXOC3L1Q86VI1 746 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 WDR20Q8TBZ3 569 aa21.84■■□□□ 1.09
SMARCB1-205ENST00000417137 OR1F2PQ96R84 312 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms