RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 NAALAD2Q9Y3Q0 740 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 MAU2Q9Y6X3 613 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 MED13Q9UHV7 2174 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 ATMQ13315 3056 aa6.04□□□□□ -1.44
USP54-202ENST00000413442 TNRC6AQ8NDV7 1962 aaKnown RBP6.04□□□□□ -1.44
USP54-202ENST00000413442 LAMA5O15230 3695 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 DOCK10Q96BY6 2186 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 SCN3AQ9NY46 2000 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 TRAV17A0A0B4J275 112 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 EXOC1LA0A1B0GW35 172 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ESYT3A0FGR9 886 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 FEZF1A0PJY2 475 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 HMX2A2RU54 273 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 TTLL8A6PVC2 850 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 RIPK2O43353 540 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 CHST10O43529 356 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 DYRK3O43781 588 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 B3GALT2O43825 422 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ZNF500O60304 480 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 CCNT2O60583 730 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 PRMT3O60678 531 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 CTNSO60931 367 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 SCELO95171 688 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 CLDN9O95484 217 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ACSL3O95573 720 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ALDOAP04075 364 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 PRB1P04280 392 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 FHP07954 510 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 PRR35P0CG20 571 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 GFAPP14136 432 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ECHS1P30084 290 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 GALNSP34059 522 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 GSTM5P46439 218 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 HSPA7P48741 367 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 MRPS25P82663 173 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 FOXK1P85037 733 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 TLE1Q04724 770 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 TBL3Q12788 808 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 HYAL2Q12891 473 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 OR4D1Q15615 310 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 MEP1AQ16819 746 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.03□□□□□ -1.44
USP54-202ENST00000413442 DEPDC1Q5TB30 811 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ABHD17BQ5VST6 288 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 MBOAT1Q6ZNC8 495 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 PRICKLE2Q7Z3G6 844 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 CROCCP2Q86T23 111 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 TMPRSS11BQ86T26 416 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 LAPTM4BQ86VI4 370 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 PLD3Q8IV08 490 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ZC3H7AQ8IWR0 971 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 CENPLQ8N0S6 344 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 ARMC10Q8N2F6 343 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 TMEM132CQ8N3T6 1108 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 RIBC1Q8N443 379 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 SNX31Q8N9S9 440 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ANKRD53Q8N9V6 530 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 L3MBTL4Q8NA19 623 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ZNF740Q8NDX6 193 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 OR8K3Q8NH51 312 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 DNAJB14Q8TBM8 379 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 TANKQ92844 425 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 DAZLQ92904 295 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 RGMAQ96B86 450 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 MS4A6EQ96DS6 147 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 THOC3Q96J01 351 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 QRFPRQ96P65 431 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 GPR78Q96P69 363 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 PAFAH2Q99487 392 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 BARD1Q99728 777 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 WDR77Q9BQA1 342 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 PELOQ9BRX2 385 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 NUDT9Q9BW91 350 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 SHCBP1LQ9BZQ2 653 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ROPN1BQ9BZX4 212 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 VN1R1Q9GZP7 353 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 COPS7BQ9H9Q2 264 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 ROPN1Q9HAT0 212 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 MMP25Q9NPA2 562 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 IGSF5Q9NSI5 407 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 STMN3Q9NZ72 180 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 SLC17A6Q9P2U8 582 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 CTSFQ9UBX1 484 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 FBXL4Q9UKA2 621 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 RALYQ9UKM9 306 aaKnown RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 GRID1Q9ULK0 1009 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 ZNF490Q9ULM2 529 aaPredicted RBP6.03□□□□□ -1.44
USP54-202ENST00000413442 LOC400499M0QZD8 3231 aa6.03□□□□□ -1.44
USP54-202ENST00000413442 TCRBV16S1A1N1A0A5B0 115 aa6.02□□□□□ -1.45
USP54-202ENST00000413442 SERTM1A2A2V5 107 aa6.02□□□□□ -1.45
USP54-202ENST00000413442 KRT87PA6NCN2 255 aa6.02□□□□□ -1.45
USP54-202ENST00000413442 NCF1BA6NI72 391 aaPredicted RBP6.02□□□□□ -1.45
USP54-202ENST00000413442 NCF1CA8MVU1 366 aaPredicted RBP6.02□□□□□ -1.45
USP54-202ENST00000413442 SUPT3HB4E1H0 165 aa6.02□□□□□ -1.45
USP54-202ENST00000413442 POC1B-GALNT4F8VUJ3 575 aa6.02□□□□□ -1.45
USP54-202ENST00000413442 SGK494L7N484 410 aa6.02□□□□□ -1.45
USP54-202ENST00000413442 P2RX6O15547 441 aa6.02□□□□□ -1.45
USP54-202ENST00000413442 CDH16O75309 829 aa6.02□□□□□ -1.45
USP54-202ENST00000413442 SUPT3HO75486 399 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms