RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CYSRT1A8MQ03 144 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 SUPT3HB4E1H0 165 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 PCDH17O14917 1159 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 B4GALT2O60909 372 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 VPS4BO75351 444 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 SUPT3HO75486 399 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 CYC1P08574 325 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 GLRBP48167 497 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 ST13P50502 369 aaKnown RBP17.93■□□□□ 0.46
SF3A1-202ENST00000411423 RUNX2Q13950 521 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 E2F2Q14209 437 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 ABRAXAS2Q15018 415 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 PDK4Q16654 411 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 IRAK1BP1Q5VVH5 260 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 ATCAYQ86WG3 371 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 UHMK1Q8TAS1 419 aaKnown RBP17.93■□□□□ 0.46
SF3A1-202ENST00000411423 SLC44A1Q8WWI5 657 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 CNDP1Q96KN2 507 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 QRFPRQ96P65 431 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 FMO2Q99518 471 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 BARD1Q99728 777 aaKnown RBP17.93■□□□□ 0.46
SF3A1-202ENST00000411423 NPAS2Q99743 824 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 EPS8L2Q9H6S3 715 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 NT5DC2Q9H857 520 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 ZNF358Q9NW07 568 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 MAP10Q9P2G4 905 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 MTRF1LQ9UGC7 380 aaKnown RBP17.93■□□□□ 0.46
SF3A1-202ENST00000411423 VPS4AQ9UN37 437 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 ACOT9Q9Y305 439 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 PRRC2CQ9Y520 2896 aaKnown RBP17.93■□□□□ 0.46
SF3A1-202ENST00000411423 A0A096LPK6 155 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 MAGEB17A8MXT2 336 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 CLGNO14967 610 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 H2AFYO75367 372 aaKnown RBP17.92■□□□□ 0.46
SF3A1-202ENST00000411423 BTN3A2P78410 334 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 UBAP2LQ14157 1087 aaKnown RBP17.92■□□□□ 0.46
SF3A1-202ENST00000411423 ADPRMQ3LIE5 342 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 GLE1Q53GS7 698 aaKnown RBP17.92■□□□□ 0.46
SF3A1-202ENST00000411423 SFT2D3Q587I9 215 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 XKR6Q5GH73 641 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 FCRLBQ6BAA4 426 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 PLAG1Q6DJT9 500 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 RIPOR1Q6ZS17 1223 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 LRRC70Q7Z2Q7 622 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 TMEM52Q8NDY8 209 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 MNS1Q8NEH6 495 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 UBTD2Q8WUN7 234 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 GAL3ST3Q96A11 431 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 PTCD3Q96EY7 689 aaKnown RBP17.92■□□□□ 0.46
SF3A1-202ENST00000411423 RHBGQ9H310 441 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 EHD1Q9H4M9 534 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 CNOT10Q9H9A5 744 aaKnown RBP17.92■□□□□ 0.46
SF3A1-202ENST00000411423 NECTIN3Q9NQS3 549 aa17.92■□□□□ 0.46
SF3A1-202ENST00000411423 A0A087X1B8 175 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 MAN1A2O60476 641 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 WFS1O76024 890 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 RNF224P0DH78 156 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 MAOAP21397 527 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 IL10P22301 178 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 PHBP35232 272 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 MAGEA12P43365 314 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 HNRNPFP52597 415 aaKnown RBP17.91■□□□□ 0.46
SF3A1-202ENST00000411423 CHIT1Q13231 466 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 ZNF169Q14929 603 aaPredicted RBP17.91■□□□□ 0.46
SF3A1-202ENST00000411423 NR6A1Q15406 480 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 NSDHLQ15738 373 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 BTBD16Q32M84 506 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 PAPD4Q6PIY7 484 aaKnown RBP17.91■□□□□ 0.46
SF3A1-202ENST00000411423 KRT78Q8N1N4 520 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 RNF175Q8N4F7 328 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 KIF18AQ8NI77 898 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 CCT6BQ92526 530 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 ISL2Q96A47 359 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 PAFAH2Q99487 392 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 CAPS2Q9BXY5 557 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 CLDN16Q9Y5I7 305 aa17.91■□□□□ 0.46
SF3A1-202ENST00000411423 IGKV3D-11A0A0A0MRZ8 115 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 URADA6NGE7 173 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 TGFBR3LH3BV60 316 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 ERI3O43414 337 aaKnown RBP17.9■□□□□ 0.46
SF3A1-202ENST00000411423 CLEC3AO75596 197 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 KLHL2O95198 593 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 WDPCPO95876 746 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 S100BP04271 92 aaPredicted RBP17.9■□□□□ 0.46
SF3A1-202ENST00000411423 TUBB4AP04350 444 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 CASP2P42575 452 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 TSFMP43897 325 aaKnown RBP17.9■□□□□ 0.46
SF3A1-202ENST00000411423 EIF2S3LQ2VIR3 472 aaKnown RBP17.9■□□□□ 0.46
SF3A1-202ENST00000411423 H3F3CQ6NXT2 135 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 UBE3DQ7Z6J8 389 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 RHEBL1Q8TAI7 183 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 DCAKDQ8WVC6 231 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 F2RL3Q96RI0 385 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 C19orf25Q9UFG5 118 aaPredicted RBP17.9■□□□□ 0.46
SF3A1-202ENST00000411423 NFU1Q9UMS0 254 aa17.9■□□□□ 0.46
SF3A1-202ENST00000411423 COPG1Q9Y678 874 aaKnown RBP17.9■□□□□ 0.46
SF3A1-202ENST00000411423 K7EPI3 171 aa17.89■□□□□ 0.45
SF3A1-202ENST00000411423 KIF2AO00139 706 aaPredicted RBP17.89■□□□□ 0.45
SF3A1-202ENST00000411423 KLK8O60259 260 aa17.89■□□□□ 0.45
SF3A1-202ENST00000411423 SEMA7AO75326 666 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms