RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 SNTNA6NMZ2 147 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 HNRNPCL2B2RXH8 293 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 GOLGA8RI6L899 631 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 CES2O00748 559 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 DCLK1O15075 740 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 POLR1CO15160 346 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 ACOX3O15254 700 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 GMFGO60234 142 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SNAP91O60641 907 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 LRCH4O75427 683 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SULT1C4O75897 302 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 AKR7A3O95154 331 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 KCNK5O95279 499 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SIX3O95343 332 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 DIRAS3O95661 229 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PTBP3O95758 552 aaKnown RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 CHEK2O96017 543 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 ATP1A1P05023 1023 aaKnown RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 TFAP2AP05549 437 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 RHOCP08134 193 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 INHBBP09529 407 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 NUDT17P0C025 328 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 H2AFZP0C0S5 128 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 FAM87AP0C7U9 286 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SMIM18P0DKX4 95 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 ETS1P14921 441 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 CHN1P15882 459 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 GABRG2P18507 467 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 GLDCP23378 1020 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 MIPP30301 263 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 NTSR1P30989 418 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 IFNA8P32881 189 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PTPN7P35236 360 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 CPOXP36551 454 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 TNFRSF4P43489 277 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PREPP48147 710 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 NR2C2P49116 596 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 DHPSP49366 369 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 VPS41P49754 854 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 KHKP50053 298 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 ETV1P50549 477 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 RASSF2P50749 326 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 RAB28P51157 221 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 CDH4P55283 916 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 NAA20P61599 178 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 MRPS21P82921 87 aaKnown RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 EFNB1P98172 346 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PPP2R2BQ00005 443 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 THOC5Q13769 683 aaKnown RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 ZNF273Q14593 569 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 UAP1Q16222 522 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 ZNF829Q3KNS6 432 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 IGSF11Q5DX21 431 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PPP6R3Q5H9R7 873 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 KCNT1Q5JUK3 1230 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SHEQ5VZ18 495 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PPP1R2P3Q6NXS1 205 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SEZ6L2Q6UXD5 910 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 LINGO4Q6UY18 593 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PPP1R21Q6ZMI0 780 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SEM1Q6ZVN7 128 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 H2AFVQ71UI9 128 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PARS2Q7L3T8 475 aaKnown RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 FAM214BQ7L5A3 538 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 ADIPOR2Q86V24 386 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 LRRC34Q8IZ02 419 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 FSTL5Q8N475 847 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 NHLRC2Q8NBF2 726 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 RBM15BQ8NDT2 890 aaKnown RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 LPCAT1Q8NF37 534 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 WDR48Q8TAF3 677 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SLC2A12Q8TD20 617 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 WFIKKN2Q8TEU8 576 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 RLN3Q8WXF3 142 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 THRSPQ92748 146 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 BORCS5Q969J3 196 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 NTAN1Q96AB6 310 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PTERQ96BW5 349 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SLC7A6OSQ96CW6 309 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 HDAC11Q96DB2 347 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 RNFT2Q96EX2 444 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 RPL10LQ96L21 214 aaKnown RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 LINC00615Q96LM1 132 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 BTBD9Q96Q07 612 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 PSMB7Q99436 277 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 NUDT22Q9BRQ3 303 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 KRTAP4-8Q9BYQ9 185 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SLC2A11Q9BYW1 496 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 ZYG11BQ9C0D3 744 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 CLPBQ9H078 707 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 EPB41L4BQ9H329 900 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 GOLPH3Q9H4A6 298 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 DHX35Q9H5Z1 703 aaKnown RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 DENND2DQ9H6A0 471 aaPredicted RBP4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SYTL2Q9HCH5 934 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 C12orf4Q9NQ89 552 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 GLRX2Q9NS18 164 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SEMA3GQ9NS98 782 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 FBXO34Q9NWN3 711 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms