RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 HPS6Q86YV9 775 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 MMP21Q8N119 569 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 AMER3Q8N944 861 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 C19orf47Q8N9M1 422 aaKnown RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 GLB1L3Q8NCI6 653 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 FAM156AQ8NDB6 213 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 OR8K5Q8NH50 307 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 N4BP2L2Q92802 583 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 CCDC74AQ96AQ1 378 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 C11orf24Q96F05 449 aaPredicted RBP3.54□□□□□ -1.84
RTN4-208ENST00000404909 ZDHHC12Q96GR4 267 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 TRAPPC9Q96Q05 1148 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 OR2A5Q96R48 311 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 AICDAQ9GZX7 198 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 SEMA6CQ9H3T2 930 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 FAM60AQ9NP50 221 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 MIEF1Q9NQG6 463 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 MAP10Q9P2G4 905 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 CROTQ9UKG9 612 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 TSC22D4Q9Y3Q8 395 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 TMEM131Q92545 1883 aa3.54□□□□□ -1.84
RTN4-208ENST00000404909 PCDH15Q96QU1 1955 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ADAMTS9Q9P2N4 1935 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 IGHV1OR21-1A0A087WYE8 117 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 A0A088AWK7 358 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 IGHV5-51A0A0C4DH38 117 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 GLOD5A6NK44 160 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 GABRR3A8MPY1 467 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 KHNYNO15037 678 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 NVLO15381 856 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 TNFSF14O43557 240 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 HCRTR1O43613 425 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 DUX1O43812 170 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 CPSF4O95639 269 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 GSNP06396 782 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ZNF888P0CJ79 500 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 LAMP1P11279 417 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ENGP17813 658 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 CERS1P27544 350 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 BSGP35613 385 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 HPCAL1P37235 193 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 DPP6P42658 865 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ARL4DP49703 201 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SLC7A2P52569 658 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 STXBP1P61764 594 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 TLR1Q15399 786 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 UGT8Q16880 541 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 DEFB134Q4QY38 66 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 C1orf146Q5VVC0 180 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 GUSBP11Q6P575 273 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 GALNT18Q6P9A2 607 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SLC23A3Q6PIS1 610 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ZC3H14Q6PJT7 736 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 ZNF793Q6ZN11 406 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 UBE3DQ7Z6J8 389 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 C10orf67Q8IYJ2 551 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PGAM4Q8N0Y7 254 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 MINDY1Q8N5J2 469 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 HIPK4Q8NE63 616 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 OR2L5Q8NG80 312 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 OR4C6Q8NH72 309 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 C16orf78Q8WTQ4 265 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 LRRC58Q96CX6 371 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 MS4A6EQ96DS6 147 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 METTL2AQ96IZ6 378 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 KCNC2Q96PR1 638 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TEFMQ96QE5 360 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 PRPF18Q99633 342 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 ZNF717Q9BY31 904 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 PIF1Q9H611 641 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 COPS7BQ9H9Q2 264 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 SPAG4Q9NPE6 437 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 C11orf16Q9NQ32 467 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SLC52A3Q9NQ40 469 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 GID8Q9NWU2 228 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 NDE1Q9NXR1 346 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TMEM9Q9P0T7 183 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 C5AR2Q9P296 337 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SLC7A8Q9UHI5 535 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 MCM8Q9UJA3 840 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 FBXW2Q9UKT8 454 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 BTBD3Q9Y2F9 522 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 PCDHGA7Q9Y5G6 932 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ZNF860A6NHJ4 632 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 C4orf51C9J302 202 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TNFRSF10AO00220 468 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SCAMP2O15127 329 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 MAP3K7O43318 606 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 B4GAT1O43505 415 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 TMPRSS11DO60235 418 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 DFNA5O60443 496 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 CIB2O75838 187 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 SEMA3DO95025 777 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ANP32DO95626 131 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 CTSBP07858 339 aa3.53□□□□□ -1.84
RTN4-208ENST00000404909 ABCB1P08183 1280 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 PIM1P11309 404 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 MLLT3P42568 568 aaPredicted RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 MRPL19P49406 292 aaKnown RBP3.53□□□□□ -1.84
RTN4-208ENST00000404909 SNRPNP63162 240 aaKnown RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms