RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PRAMEF17Q5VTA0 474 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 NEK5Q6P3R8 708 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 C16orf62Q7Z3J2 963 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ARHGAP9Q9BRR9 750 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 SLC39A3Q9BRY0 314 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 EFCAB11Q9BUY7 163 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 RAB11FIP5Q9BXF6 653 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 RARRES3Q9UL19 164 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ERVK-11Q9UQG0 969 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 SLC28A1O00337 649 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 MT-ND1P03886 318 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 UROSP10746 265 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 AOAHP28039 575 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 KIR3DL1P43629 444 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 PTPN5P54829 565 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 EMP3P54852 163 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 RAB15P59190 212 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 CLCA4Q14CN2 919 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 TECRLQ5HYJ1 363 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 CAMKVQ8NCB2 501 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 FAM156AQ8NDB6 213 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 SMPDL3BQ92485 455 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 BORCS5Q969J3 196 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 TMIGD2Q96BF3 282 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 BMFQ96LC9 184 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 DLGAP4Q9Y2H0 992 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ROS1P08922 2347 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF236Q9UL36 1845 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF821O75541 412 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 SLC22A3O75751 556 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 CEACAM5P06731 702 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 CENPAP49450 140 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 PRLHRP49683 370 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 HNMTP50135 292 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 GFERP55789 205 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 YPEL5P62699 121 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MAD2L1Q13257 205 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 CEACAM7Q14002 265 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 FRG1Q14331 258 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 TMEM52BQ4KMG9 183 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 PIGGQ5H8A4 983 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 ZCCHC8Q6NZY4 707 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MACC1Q6ZN28 852 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 TICAM1Q8IUC6 712 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 CCDC116Q8IYX3 515 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 RDH11Q8TC12 318 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 SMAD5Q99717 465 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 PCBD2Q9H0N5 130 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MVB12BQ9H7P6 319 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 RMI1Q9H9A7 625 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 LRRC37A2A6NM11 1700 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 DCDC2BA2VCK2 349 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 SLC16A5O15375 505 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 SEC24DO94855 1032 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 ENO2P09104 434 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MTHFD1P11586 935 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MAGEA6P43360 314 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 TMED10P49755 219 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 TUBA4AP68366 448 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 EIF2B5Q13144 721 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 FGL2Q14314 439 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 PDCD4Q53EL6 469 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 STEAP4Q687X5 459 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 NCCRP1Q6ZVX7 275 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 DGLUCYQ7Z3D6 616 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 PDZD3Q86UT5 571 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 TBC1D21Q8IYX1 336 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 OR4A15Q8NGL6 344 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 PEX13Q92968 403 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MCCC1Q96RQ3 725 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 AKTIPQ9H8T0 292 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 TMEM9BQ9NQ34 198 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 C1orf109Q9NX04 203 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 CNOT11Q9UKZ1 510 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 SPAARA0A1B0GVQ0 90 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 STX16-NPEPL1H3BU86 382 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 GNB5O14775 395 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 EPN2O95208 641 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 ADSLP30566 484 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MASP1P48740 699 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MAT1AQ00266 395 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 MS4A2Q01362 244 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 PYCR3Q53H96 274 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 KHDRBS2Q5VWX1 349 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 CYS1Q717R9 158 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 SYVN1Q86TM6 617 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 LILRA2Q8N149 483 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 SRFBP1Q8NEF9 429 aaKnown RBP9.88□□□□□ -0.83
COL6A3-205ENST00000392004 TNIP2Q8NFZ5 429 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 HUS1BQ8NHY5 278 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 CCDC74AQ96AQ1 378 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 CMKLR1Q99788 373 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 TRMOQ9BU70 441 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 SPHK1Q9NYA1 384 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 ITGB1BP2Q9UKP3 347 aa9.88□□□□□ -0.83
COL6A3-205ENST00000392004 RTTNQ86VV8 2226 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 H3BNH8 94 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 MATN2O00339 956 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 SLC22A2O15244 555 aa9.87□□□□□ -0.83
COL6A3-205ENST00000392004 SIGLEC6O43699 453 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms