RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZNF19P17023 458 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 BTN3A2P78410 334 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF45Q02386 682 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 SLC10A2Q12908 348 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 GRB7Q14451 532 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 TRAM2Q15035 370 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 GFOD2Q3B7J2 385 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 UNC50Q53HI1 259 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 RUNDC3AQ59EK9 446 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 MEDAGQ5VYS4 303 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 CENPSQ8N2Z9 138 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 MRGPRX2Q96LB1 330 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 ADAD1Q96M93 576 aaKnown RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 HIST1H2AAQ96QV6 131 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 AIG1Q9NVV5 245 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 ADAMTS6Q9UKP5 1117 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 C2orf92A0A1B0GVN3 265 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 H0YJX3 145 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 DLGAP1O14490 977 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 TSPAN4O14817 238 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 LDB2O43679 373 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 COQ9O75208 318 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 S1PR4O95977 384 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 RPL10P27635 214 aaKnown RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 GJA5P36382 358 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 ST3GAL4Q11206 333 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 FAM189A2Q15884 450 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 PRAMEF17Q5VTA0 474 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 DNM1P34Q6PK57 102 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 HSDL2Q6YN16 418 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF598Q86UK7 904 aaKnown RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 NSUN5Q96P11 429 aaKnown RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 PHOX2BQ99453 314 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 DPYSL5Q9BPU6 564 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 B3GNT4Q9C0J1 378 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 CERS4Q9HA82 394 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 TBCCD1Q9NVR7 557 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 PGAP2Q9UHJ9 254 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 NDRG2Q9UN36 371 aaKnown RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 MAU2Q9Y6X3 613 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 EDDM13A0A1B0GTR0 161 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 KMOO15229 486 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 MMP20O60882 483 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 SYN1P17600 705 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 SIX1Q15475 284 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 STEAP4Q687X5 459 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 RNF130Q86XS8 419 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 IFNLR1Q8IU57 520 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 INO80EQ8NBZ0 244 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 FIZ1Q96SL8 496 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 RETREG1Q9H6L5 497 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 CHMP1AQ9HD42 196 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 SERINC1Q9NRX5 453 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 TMEM5Q9Y2B1 443 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 SLITRK5O94991 958 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 TYRP14679 529 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 TCEA1P23193 301 aaKnown RBP11.04□□□□□ -0.64
PTPRF-203ENST00000372407 PREPP48147 710 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 IST1P53990 364 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 NRG3P56975 720 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 LIPJQ5W064 366 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF627Q7L945 461 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 PLCZ1Q86YW0 608 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 NRSN1Q8IZ57 195 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 SLC37A3Q8NCC5 494 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 OR52E4Q8NGH9 312 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 OSTF1Q92882 214 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 RAB8BQ92930 207 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 ASPNQ9BXN1 380 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 ADAMTS10Q9H324 1103 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 TAS2R9Q9NYW1 312 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 NLGN3Q9NZ94 848 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 CYTH4Q9UIA0 394 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 PCDHB11Q9Y5F2 797 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 PCP4L1A6NKN8 68 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 OR2AT4A6NND4 320 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 PROM1O43490 865 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 RPP14O95059 124 aaKnown RBP11.03□□□□□ -0.64
PTPRF-203ENST00000372407 GSTT2P0CG29 244 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 BCKDHAP12694 445 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF20P17024 532 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 TAS2R43P59537 309 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 SCAPQ12770 1279 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 TMEM115Q12893 351 aaPredicted RBP11.03□□□□□ -0.64
PTPRF-203ENST00000372407 FADDQ13158 208 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 GINS1Q14691 196 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 SUSD1Q6UWL2 747 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 PAQR7Q86WK9 346 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 TM9SF2Q99805 663 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 WACQ9BTA9 647 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 SAGE1Q9NXZ1 904 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 ERVK-11Q9UQG0 969 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 INSL6Q9Y581 213 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 WNT6Q9Y6F9 365 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 RASAL1O95294 804 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 RFC2P35250 354 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 CLCN2P51788 898 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 RAB39AQ14964 217 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 HACD2Q6Y1H2 254 aa11.03□□□□□ -0.64
PTPRF-203ENST00000372407 CELF5Q8N6W0 485 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms