RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ZNF324BQ6AW86 544 aaPredicted RBP18.34■□□□□ 0.53
LIME1-201ENST00000309546 GFRALQ6UXV0 394 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 CCDC25Q86WR0 208 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 CTAGE3PQ8IX95 158 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 SLC5A8Q8N695 610 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 CREB3L4Q8TEY5 395 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 RBBP8Q99708 897 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 CPNE1Q99829 537 aa18.34■□□□□ 0.53
LIME1-201ENST00000309546 A0A0G2JN53 185 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 MAN1A2O60476 641 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 PRMT3O60678 531 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 H2AFYO75367 372 aaKnown RBP18.33■□□□□ 0.52
LIME1-201ENST00000309546 CRYABP02511 175 aaKnown RBP18.33■□□□□ 0.52
LIME1-201ENST00000309546 SERPINA6P08185 405 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 C1GALT1C1LP0DN25 315 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 RNH1P13489 461 aaKnown RBP18.33■□□□□ 0.52
LIME1-201ENST00000309546 STMN1P16949 149 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 MAOAP21397 527 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 GP5P40197 560 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 CBLBQ13191 982 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 TUBA3CQ13748 450 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 C1QL3Q5VWW1 255 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 H3F3CQ6NXT2 135 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 TUBA3EQ6PEY2 450 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 SLCO4C1Q6ZQN7 724 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 FJX1Q86VR8 437 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 GPSM1Q86YR5 675 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 CA13Q8N1Q1 262 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 EXT2Q93063 718 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 GPR22Q99680 433 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 NPAS2Q99743 824 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 UTP23Q9BRU9 249 aaKnown RBP18.33■□□□□ 0.52
LIME1-201ENST00000309546 TMEM79Q9BSE2 394 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 KLHL1Q9NR64 748 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 UTP11Q9Y3A2 253 aaKnown RBP18.33■□□□□ 0.52
LIME1-201ENST00000309546 DOPEY1Q5JWR5 2465 aa18.33■□□□□ 0.52
LIME1-201ENST00000309546 FAM159BA6NKW6 160 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 GABRR3A8MPY1 467 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 FAM227AF5H4B4 570 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 UNC5CO95185 931 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 WISP3O95389 354 aaPredicted RBP18.32■□□□□ 0.52
LIME1-201ENST00000309546 CD1DP15813 335 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 MST1P26927 711 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 HSPA7P48741 367 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 PLTPP55058 493 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 STXBP1P61764 594 aaKnown RBP18.32■□□□□ 0.52
LIME1-201ENST00000309546 BTN3A2P78410 334 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 OC90Q02509 493 aaPredicted RBP18.32■□□□□ 0.52
LIME1-201ENST00000309546 OR1C1Q15619 314 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 ZNF787Q6DD87 383 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 TMIGD1Q6UXZ0 262 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 QSOX2Q6ZRP7 698 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 C3orf62Q6ZUJ4 267 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 KLHDC8AQ8IYD2 350 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 TCAIMQ8N3R3 496 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 KIF2BQ8N4N8 673 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 SNX31Q8N9S9 440 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 ESAMQ96AP7 390 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 FAR2Q96K12 515 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 SIGLEC12Q96PQ1 595 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 AICDAQ9GZX7 198 aa18.32■□□□□ 0.52
LIME1-201ENST00000309546 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.32■□□□□ 0.52
LIME1-201ENST00000309546 A8MUA0 341 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 TAPBPO15533 448 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 ERI3O43414 337 aaKnown RBP18.31■□□□□ 0.52
LIME1-201ENST00000309546 ZG16O60844 167 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 S100BP04271 92 aaPredicted RBP18.31■□□□□ 0.52
LIME1-201ENST00000309546 STSP08842 583 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 SMIM10L1P0DMW3 83 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 CD96P40200 585 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 GPX6P59796 221 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 ATP6V0D1P61421 351 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 SLMAPQ14BN4 828 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 OR4D1Q15615 310 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 SYT10Q6XYQ8 523 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 KRT78Q8N1N4 520 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 PPM1NQ8N819 430 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 TTLQ8NG68 377 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 DNAJB8Q8NHS0 232 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 GAL3ST3Q96A11 431 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 SMIM10Q96HG1 83 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 HES7Q9BYE0 225 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 RAB17Q9H0T7 212 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 CDCP1Q9H5V8 836 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 CNOT10Q9H9A5 744 aaKnown RBP18.31■□□□□ 0.52
LIME1-201ENST00000309546 CLK4Q9HAZ1 481 aaKnown RBP18.31■□□□□ 0.52
LIME1-201ENST00000309546 PRM3Q9NNZ6 103 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 NECTIN3Q9NQS3 549 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 PRDM9Q9NQV7 894 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 DNAJC11Q9NVH1 559 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 CD274Q9NZQ7 290 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 SEC14L3Q9UDX4 400 aa18.31■□□□□ 0.52
LIME1-201ENST00000309546 A0A1B0GUH1 482 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 CLGNO14967 610 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 GSTA2P09210 222 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 HNRNPH1P31943 449 aaKnown RBP18.3■□□□□ 0.52
LIME1-201ENST00000309546 GMPRP36959 345 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 RAB10P61026 200 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 KBTBD12Q3ZCT8 623 aa18.3■□□□□ 0.52
LIME1-201ENST00000309546 SPINK14Q6IE38 97 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms