RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GPR151Q8TDV0 419 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ABHD16BQ9H3Z7 469 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 RDH14Q9HBH5 336 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ERVK-18Q9QC07 812 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 POMT1Q9Y6A1 747 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 IGLV3-22A0A075B6J6 115 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM221A6NGB7 291 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 HSPA12AO43301 675 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 IFNA21P01568 189 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 THEGLP0DJG4 465 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF35P13682 527 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 TBPP20226 339 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 IGFBP4P22692 258 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 OR3A3P47888 321 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 OR3A2P47893 321 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 DLX5P56178 289 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 RPS14P62263 151 aaKnown RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PLP2Q04941 152 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PCBP2Q15366 365 aaKnown RBP eCLIP5.08□□□□□ -1.61e-9■■■■■ 28.3
SCN1A-201ENST00000303395 DUOXA1Q1HG43 343 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MPP7Q5T2T1 576 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 NCEH1Q6PIU2 408 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 FRRS1Q6ZNA5 592 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ALYREFQ86V81 257 aaKnown RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PAPD5Q8NDF8 572 aaKnown RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 OR56B4Q8NH76 319 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SPATA22Q8NHS9 363 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 VANGL1Q8TAA9 524 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MAPK15Q8TD08 544 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ADIPOR1Q96A54 375 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 LGALS12Q96DT0 336 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ZDHHC5Q9C0B5 715 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 HMX1Q9NP08 348 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 B3GAT2Q9NPZ5 323 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 NLGN3Q9NZ94 848 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PDP1Q9P0J1 537 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 HSFX1Q9UBD0 423 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 RIMS3Q9UJD0 308 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 CEP250Q9BV73 2442 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ALS2Q96Q42 1657 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 EI24O14681 340 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PI15O43692 258 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 CREBL2O60519 120 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 RAB40ALP0C0E4 278 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ALPPL2P10696 532 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PGAM2P15259 253 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 GADD45AP24522 165 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 HSPA7P48741 367 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MYLK3Q32MK0 819 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SLC9B1Q4ZJI4 515 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 C15orf39Q6ZRI6 1047 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PIWIL3Q7Z3Z3 882 aaKnown RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 CCDC24Q8N4L8 307 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 KIAA1958Q8N8K9 716 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 OR51D1Q8NGF3 324 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 THAP6Q8TBB0 222 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 RAB40AQ8WXH6 277 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SEMA4DQ92854 862 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SLC22A18Q96BI1 424 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SIPA1Q96FS4 1042 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MYOCQ99972 504 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MED18Q9BUE0 208 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SAP130Q9H0E3 1048 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 WDR26Q9H7D7 661 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 CUEDC1Q9NWM3 386 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 KIF25Q9UIL4 384 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 TUBGCP6Q96RT7 1819 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 GPR89AB7ZAQ6 455 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 LGI1O95970 557 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 TP53P04637 393 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 GPR89BP0CG08 455 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 RPL10P27635 214 aaKnown RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ADH6P28332 368 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 WNT3AP56704 352 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SRPXP78539 464 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SEMA3BQ13214 749 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MRPL49Q13405 166 aaKnown RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PCLAFQ15004 111 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 MED22Q15528 200 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 AP5B1Q2VPB7 878 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 LDLRAP1Q5SW96 308 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 LIPJQ5W064 366 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SLC6A19Q695T7 634 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 FBXL19Q6PCT2 694 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 C5orf46Q6UWT4 87 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 FAM83HQ6ZRV2 1179 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 GLT6D1Q7Z4J2 308 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 LRRC28Q86X40 367 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 CBARPQ8N350 705 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-201ENST00000303395 SPATA6LQ8N4H0 392 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 BEST4Q8NFU0 473 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 WFIKKN2Q8TEU8 576 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PPCDCQ96CD2 204 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 C1QTNF3Q9BXJ4 246 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 BRF2Q9HAW0 419 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 ERVK-5Q9HDB9 667 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM181Q9P2C4 612 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 BTNL2Q9UIR0 455 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 PPM1HQ9ULR3 514 aa5.08□□□□□ -1.6
SCN1A-201ENST00000303395 COG5Q9UP83 839 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms